Skip to content

Commit

Permalink
update readme for 1.5.1
Browse files Browse the repository at this point in the history
  • Loading branch information
wbaopaul committed Feb 13, 2023
1 parent 7e2f995 commit 70b2d59
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion README.md
Original file line number Diff line number Diff line change
Expand Up @@ -51,7 +51,7 @@ Updates
- Now provide [scATAC-pro tutorial in R](https://scatacpro-in-r.netlify.app/index.html) for access QC metrics and perform downstream analysis
- Current version: 1.5.1
- Highlighted updates
* **integrate** module takes input as a [SampleSheet](SampleSheet.csv file), in which sample names, paths of peaks, fragments and cell barcodes files for each sample can be specified. Other parameters for integration are specified in the [configure_user](configure_user.txt) file (v1.5.1)
* **integrate** module takes input as a [SampleSheet](SampleSheet.csv) file, in which sample names, paths of peaks, fragments and cell barcodes files for each sample can be specified. Other parameters for integration are specified in the [configure_user](configure_user.txt) file (v1.5.1)
* New module **reprocess_cellranger_output** added, to reprocess 10x scATAC-seq data (including atac in 10x multiome assay) originally processed by cellranger, taking cellranger processed .bam and .fragments.tsv.gz files as input (v1.4.3)
* More friendly to single-end sequencing data (v1.4.2)
* New module *labelTransfer* added, to do label trasfer (for cell annotation) from cell annotation of scRNA-seq data. First construct a gene by cell activity matrix, then use *FindTransferAnchors* and *TransferData* function from Seurat R package to predicted cell type annotation from the cell annotaiton in scRNA-seq data (v1.4.0)
Expand Down

0 comments on commit 70b2d59

Please sign in to comment.