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merging new htslib
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walaj committed Oct 21, 2017
1 parent 248d679 commit 6285724
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion htslib
Submodule htslib updated 36 files
+10 −7 Makefile
+0 −15 NEWS
+115 −50 bgzf.c
+0 −4 configure.ac
+17 −12 cram/cram_codecs.c
+5 −5 cram/cram_decode.c
+16 −23 cram/cram_index.c
+9 −9 cram/cram_io.c
+0 −6 cram/cram_io.h
+40 −0 cram/mFILE.c
+430 −0 cram/vlen.c
+50 −0 cram/vlen.h
+154 −0 cram/zfio.c
+62 −0 cram/zfio.h
+71 −35 faidx.c
+6 −33 hfile.c
+0 −21 hfile_internal.h
+41 −118 hts.c
+1 −1 htsfile.1
+5 −2 htslib.mk
+3 −3 htslib/hts.h
+0 −93 htslib/hts_log.h
+1 −5 htslib/sam.h
+1 −1 htslib/vcf.h
+1 −2 htslib_vars.mk
+12 −13 knetfile.c
+7 −4 multipart.c
+8 −8 regidx.c
+65 −49 sam.c
+20 −26 synced_bcf_reader.c
+1 −1 tabix.1
+6 −5 tbx.c
+0 −96 test/test-logging.pl
+0 −12 test/test.pl
+124 −121 vcf.c
+39 −41 vcfutils.c

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