Separate environments #1236
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Docs | |
| on: | |
| push: | |
| branches: | |
| - "master" | |
| - "maintenance/.+" | |
| pull_request: | |
| branches: | |
| - "master" | |
| - "dev" | |
| - "maintenance/.+" | |
| schedule: | |
| # every two weeks on Monday at 3 am | |
| - cron: "0 3/336 * * 1" | |
| jobs: | |
| docs: | |
| name: Docs | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| python-version: "3.8" | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| activate-environment: teachopencadd | |
| environment-file: devtools/test_env.yml | |
| - name: Additional info about the build | |
| shell: bash | |
| run: | | |
| uname -a | |
| df -h | |
| ulimit -a | |
| - name: Install package | |
| shell: bash -l {0} | |
| run: | | |
| pip install . --no-deps -vv | |
| - name: Environment Information | |
| shell: bash -l {0} | |
| run: | | |
| conda info --all | |
| conda list | |
| - name: Run Sphinx | |
| shell: bash -l {0} | |
| run: | | |
| cd docs | |
| make clean | |
| SPHINXOPTS="-j2 -T --keep-going" make html | |
| # Extra UGLY patch to fix PDF IFrame on T005 | |
| cp talktorials/images/*.pdf _build/html/_images/ | |
| sed -i 's|src="images/butina_full.pdf"|src="../_images/butina_full.pdf"|g' \ | |
| _build/html/talktorials/T005_compound_clustering.html | |
| - name: Check 404s (Sphinx) | |
| shell: bash -l {0} | |
| run: | | |
| cd docs/_build/html | |
| npx linkinator . --verbosity error --recurse -r --retry-errors-jitter --timeout 10000 \ | |
| -s "/*.txt" \ | |
| -s "https://onlinelibrary.wiley.com/doi/*" \ | |
| -s "https://wires.onlinelibrary.wiley.com/doi/*" \ | |
| -s "https://chemistry-europe.onlinelibrary.wiley.com/doi/*" \ | |
| -s "https://towardsdatascience.com" \ | |
| -s "https://medium.com" \ | |
| -s "https://*.medium.com" \ | |
| -s "http[s]://quora.com" \ | |
| -s "http[s]://doi.org/*" \ | |
| -s "http[s]://pubs.acs.org/*" \ | |
| -s "ftp://*" \ | |
| -s "https://machinelearningmastery.com/*" \ | |
| -s "https://www.schrodinger.com/training/videos/*" \ | |
| -s "/*.mp4" \ | |
| -s "/*.pdf" \ | |
| -s "/*.png" \ | |
| -s "https://www.icoa.fr/pkidb/index.html" \ | |
| - name: Check 404s (README) | |
| uses: gaurav-nelson/github-action-markdown-link-check@v1 | |
| with: | |
| max-depth: 1 | |
| - name: Deploy | |
| uses: peaceiris/actions-gh-pages@v3 | |
| if: github.ref == 'refs/heads/master' | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| publish_dir: ./docs/_build/html |