Separate environments for each talktorial #1199
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| name: Docs | |
| on: | |
| push: | |
| branches: | |
| - "master" | |
| - "maintenance/.+" | |
| pull_request: | |
| branches: | |
| - "master" | |
| - "dev" | |
| - "maintenance/.+" | |
| schedule: | |
| # every two weeks on Monday at 3 am | |
| - cron: "0 3/336 * * 1" | |
| jobs: | |
| docs: | |
| name: Docs | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| python-version: "3.8" | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| activate-environment: teachopencadd | |
| environment-file: devtools/test_env.yml | |
| - name: Additional info about the build | |
| shell: bash | |
| run: | | |
| uname -a | |
| df -h | |
| ulimit -a | |
| - name: Install package | |
| shell: bash -l {0} | |
| run: | | |
| pip install . --no-deps -vv | |
| - name: Environment Information | |
| shell: bash -l {0} | |
| run: | | |
| conda info --all | |
| conda list | |
| - name: Run Sphinx | |
| shell: bash -l {0} | |
| run: | | |
| cd docs | |
| make clean | |
| SPHINXOPTS="-j2 -T --keep-going" make html | |
| # Extra UGLY patch to fix PDF IFrame on T005 | |
| cp talktorials/images/*.pdf _build/html/_images/ | |
| sed -i 's|src="images/butina_full.pdf"|src="../_images/butina_full.pdf"|g' \ | |
| _build/html/talktorials/T005_compound_clustering.html | |
| - name: Check 404s (Sphinx) | |
| shell: bash -l {0} | |
| run: | | |
| cd docs/_build/html | |
| npx linkinator . --verbosity error --recurse -r --retry-errors-jitter --timeout 10000 \ | |
| -s "/*.txt" \ | |
| -s "https://onlinelibrary.wiley.com/doi/*" \ | |
| -s "https://wires.onlinelibrary.wiley.com/doi/*" \ | |
| -s "https://chemistry-europe.onlinelibrary.wiley.com/doi/*" \ | |
| -s "https://towardsdatascience.com" \ | |
| -s "https://medium.com" \ | |
| -s "https://*.medium.com" \ | |
| -s "http[s]://quora.com" \ | |
| -s "http[s]://doi.org/*" \ | |
| -s "http[s]://pubs.acs.org/*" \ | |
| -s "ftp://*" \ | |
| -s "https://machinelearningmastery.com/*" \ | |
| -s "https://www.schrodinger.com/training/videos/*" \ | |
| -s "/*.mp4" \ | |
| -s "/*.pdf" \ | |
| -s "/*.png" \ | |
| -s "https://www.icoa.fr/pkidb/index.html" \ | |
| - name: Check 404s (README) | |
| uses: gaurav-nelson/github-action-markdown-link-check@v1 | |
| with: | |
| max-depth: 1 | |
| - name: Deploy | |
| uses: peaceiris/actions-gh-pages@v3 | |
| if: github.ref == 'refs/heads/master' | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| publish_dir: ./docs/_build/html |