CI #455
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| name: CI | |
| on: | |
| # GitHub has started calling new repo's first branch "main" https://github.com/github/renaming | |
| # Existing codes likely still have "master" as the primary branch | |
| # Both are tracked here to keep legacy and new codes working | |
| push: | |
| branches: | |
| - "main" | |
| pull_request: | |
| branches: | |
| - "main" | |
| schedule: | |
| # Automated tests: | |
| # Scheduled workflows run on the latest commit on the default or base branch. | |
| # (from https://help.github.com/en/actions/reference/events-that-trigger-workflows#scheduled-events-schedule) | |
| - cron: "0 3 * * 1" | |
| jobs: | |
| test: | |
| name: Pytest | |
| runs-on: ${{ matrix.cfg.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| cfg: | |
| - os: ubuntu-latest | |
| python-version: "3.7" | |
| - os: ubuntu-latest | |
| python-version: "3.9" | |
| - os: macos-latest | |
| python-version: "3.7" | |
| - os: windows-latest | |
| python-version: "3.7" | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Additional info about the build | |
| shell: bash | |
| run: | | |
| uname -a | |
| df -h | |
| ulimit -a | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| python-version: ${{ matrix.cfg.python-version }} | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| activate-environment: test | |
| environment-file: devtools/conda-envs/test_env.yaml | |
| channels: conda-forge,defaults | |
| - name: Install package | |
| # conda setup requires this special shell | |
| shell: bash -l {0} | |
| run: | | |
| python -m pip install . --no-deps | |
| conda list | |
| - name: Run package tests | |
| # conda setup requires this special shell | |
| shell: bash -l {0} | |
| run: | | |
| pytest -v --cov=kissim --cov-report=xml --cov-config=setup.cfg --color=yes kissim/tests/ | |
| - name: Run docs notebooks tests (on Linux only) | |
| shell: bash -l {0} | |
| run: | | |
| if [ "$RUNNER_OS" == "Linux" ]; then | |
| PYTEST_ARGS="--nbval-lax --current-env --nbval-cell-timeout=900" | |
| pytest $PYTEST_ARGS docs/tutorials/*.ipynb -vvv | |
| else | |
| echo "Do not run notebooks under $RUNNER_OS" | |
| fi | |
| - name: CodeCov | |
| uses: codecov/codecov-action@v1 | |
| with: | |
| file: ./coverage.xml | |
| flags: unittests | |
| name: codecov-${{ matrix.os }}-py${{ matrix.python-version }} | |
| lint-format-package: | |
| runs-on: ubuntu-latest | |
| env: | |
| CI_OS: ubuntu-latest | |
| PACKAGE: "kissim" | |
| PYVER: "3.8" | |
| steps: | |
| - name: Checkout the code | |
| uses: actions/checkout@v3 | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| python-version: "3.8" | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| activate-environment: test | |
| environment-file: devtools/conda-envs/test_env.yaml | |
| channels: conda-forge,defaults | |
| - name: Install linter and formatter | |
| shell: bash -l {0} | |
| run: | | |
| conda install -y pylint black | |
| - name: Run pylint | |
| shell: bash -l {0} | |
| run: | | |
| pylint $PACKAGE/ | |
| - name: Run black check | |
| shell: bash -l {0} | |
| if: always() | |
| run: | | |
| black --check -l 99 $PACKAGE/ | |
| lint-format-notebooks: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: actions/setup-python@v2 | |
| - name: Install notebook linter and formatter | |
| run: | | |
| python -m pip install black-nb | |
| python -m pip install flake8-nb | |
| - name: Run black-nb | |
| shell: bash | |
| run: | | |
| black-nb -l 99 --check docs/tutorials/*ipynb | |
| - name: Run flake8-nb | |
| shell: bash | |
| run: | | |
| flake8-nb --config setup.cfg docs/tutorials/*ipynb |