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Merge pull request #21 from volkamerlab/update_data_readme
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Update data README
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dominiquesydow authored Jul 22, 2020
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Expand Up @@ -15,11 +15,11 @@ In order to run the analysis notebooks, please download this dataset to this fol

Data extracted from `combinatorial_library_deduplicated.json`, performed in `notebooks/4_1_combinatorial_library_data_preparation.ipynb` at https://github.com/volkamerlab/KinFragLib.

- `metadata.json`: Bond and fragment IDs for each recombined ligand
- `n_atoms.csv`: Number of atoms for each recombined ligand
- `ro5.csv`: Number of ligands that fulfill Lipinski's rule of five (Ro5) and its individual criteria; number of ligands in total
- `subpockets.csv`: Number of ligands per subpocket combination
- `original_exact.json`: Ligands with exact matches in original ligands, i.e. KLIFS ligands that were used for the fragmentation
- `original_substructure.json`: Ligands with substructure matches in original ligands, i.e. KLIFS ligands that were used for the fragmentation
- `chembl_exact.json`: Ligands with exact matches in ChEMBL
- `chembl_most_similar.json`: Most similar ligand in ChEMBL for each recombined ligand
- `chembl_highly_similar.json`: Most similar ligand in ChEMBL for each recombined ligand with similarity greater than 0.9.

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