subset for tsne

volkamerlab · Nov 12, 2024 · 9b53c0e · 9b53c0e
1 parent d84df6e
commit 9b53c0e
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Showing 2 changed files with 9 additions and 9 deletions.
diff --git a/kinfraglib/filters/plots.py b/kinfraglib/filters/plots.py
@@ -330,10 +330,10 @@ def debug_tsne(fragment_library):
     )
 
     pca = PCA(n_components=50)
-    crds = pca.fit_transform(list(fragment_library_concat["maccs"]))
+    crds = pca.fit_transform(list(fragment_library_concat["maccs"]))[100]
 
     crds_embedded = TSNE(
-        n_components=2, init="pca", learning_rate="auto"
+        n_components=2, init="pca", learning_rate="auto", random_state=0
     ).fit_transform(crds)