Apptainer Build wFSL #3
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| name: Apptainer Build wFSL | |
| on: | |
| workflow_dispatch: | |
| inputs: | |
| IMAGE_NAME: | |
| description: 'Name of the image to build' | |
| default: 'infant-freesurfer-wfsl' | |
| required: false | |
| IMAGE_TAG: | |
| description: 'Tag of the image to build' | |
| default: 'latest' | |
| required: false | |
| defaults: | |
| run: | |
| shell: bash | |
| env: | |
| APPTAINER_VERSION: 1.2.5 | |
| ORAS_VERSION: 1.1.0 | |
| jobs: | |
| build-and-push-image: | |
| runs-on: ubuntu-latest | |
| name: Build Apptainer image | |
| permissions: | |
| contents: write | |
| packages: write | |
| steps: | |
| - name: Clear up space | |
| run: | | |
| set -eux -o pipefail | |
| sudo rm -rf /opt/hostedtoolcache /usr/share/dotnet /usr/local/lib/android /usr/share/swift /usr/local/lib/android | |
| - name: Download Apptainer | |
| run: | | |
| set -eux -o pipefail | |
| curl -o "apptainer-${APPTAINER_VERSION}.deb" -L https://github.com/apptainer/apptainer/releases/download/v${APPTAINER_VERSION}/apptainer_${APPTAINER_VERSION}_amd64.deb | |
| export DEBIAN_FRONTEND=noninteractive | |
| sudo apt-get update -yq || echo "Couldn't update apt packages. Will attempt installation without update" >&2 | |
| sudo dpkg --install --force-depends "apptainer-${APPTAINER_VERSION}.deb" && sudo apt-get install --fix-broken --yes --quiet | |
| apptainer >&2 --version && echo >&2 "Apptainer installed successfully!" | |
| apptainer remote login -u ${{ github.actor }} -p ${{ secrets.GITHUB_TOKEN }} oras://ghcr.io && echo "Logged in to remote registry successfully" >&2 | |
| - name: Install ORAS | |
| run: | | |
| set -eux -o pipefail | |
| curl -o "oras_${ORAS_VERSION}.tar.gz" -L "https://github.com/oras-project/oras/releases/download/v${ORAS_VERSION}/oras_${ORAS_VERSION}_linux_amd64.tar.gz" | |
| # Install the executable: | |
| tar -xvf oras_${ORAS_VERSION}.tar.gz && chmod +x oras && sudo mv oras /usr/local/bin/oras | |
| sudo mv "${DOWNLOAD_PATH}" /usr/local/bin/oras && sudo chmod +x /usr/local/bin/oras & oras >&2 version && echo >&2 "oras installed successfully!" | |
| oras login -u ${{ github.actor }} -p ${{ secrets.GITHUB_TOKEN }} ghcr.io && echo "Logged in to remote registry successfully" >&2 | |
| - name: Check out code for the container build | |
| uses: actions/checkout@v4 | |
| - name: Build Container | |
| run: | | |
| set -eux -o pipefail | |
| IMAGE_NAME=${{ inputs.IMAGE_NAME }} | |
| IMAGE_TAG=${{ inputs.IMAGE_TAG }} | |
| IMAGE_PATH="${GITHUB_WORKSPACE}/${IMAGE_NAME}".sif | |
| echo "IMAGE_NAME=${IMAGE_NAME}" >> $GITHUB_ENV | |
| echo "IMAGE_TAG=${IMAGE_TAG}" >> $GITHUB_ENV | |
| echo "IMAGE_PATH=${IMAGE_PATH}" >> $GITHUB_ENV | |
| echo "IMAGE_NAME=${IMAGE_NAME}" >&2 | |
| echo "IMAGE_TAG=${IMAGE_TAG}" >&2 | |
| echo "IMAGE_PATH=${IMAGE_PATH}" >&2 | |
| apptainer build --fix-perms --disable-cache --force "${IMAGE_PATH}" SingularitywFSL | |
| echo "Container built successfully" >&2 | |
| echo "Container size:" >&2 | |
| du -h "${IMAGE_PATH}" >&2 | |
| echo "Container labels:" >&2 | |
| apptainer inspect "${IMAGE_PATH}" >&2 | |
| - name: Push Container | |
| run: | | |
| set -eux -o pipefail | |
| # Log in: | |
| apptainer remote login -u ${{ github.actor }} -p ${{ secrets.GITHUB_TOKEN }} oras://ghcr.io | |
| # Push the image: | |
| apptainer push -U "${IMAGE_PATH}" oras://ghcr.io/${{ github.repository }}/${IMAGE_NAME}:${IMAGE_TAG} | |
| echo "Done" >&2 |