Routine submodule updates #720
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| name: Routine submodule updates | |
| on: | |
| schedule: | |
| - cron: '0 21 * * 1-5' # utc | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| branches: | |
| - main | |
| # Cacnel previous runs if a new push is sent | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| housekeeping: | |
| runs-on: ubuntu-latest | |
| permissions: | |
| id-token: write | |
| contents: write | |
| pages: write | |
| steps: | |
| - name: Checkout repository and submodules | |
| uses: actions/checkout@master | |
| - name: Checkout latest submodules | |
| run: git submodule update --init --recursive --remote | |
| - name: List files in the repository (Useful for debugging) | |
| run: | | |
| tree ${{ github.workspace }} | |
| - name: setup python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.10.6 #install the python needed | |
| - name: Install requirements | |
| run: | | |
| pip install -r ${{ github.workspace }}/code/sdc.tests/code/requirements.txt | |
| - name: Run all tests (that match with test_*.py under the sdc.tests submodule) | |
| continue-on-error: true | |
| run: | | |
| for f in code/sdc.tests/code/tests/test_*.py; do python "$f"; done | |
| - name: Run data inventory | |
| run: | | |
| python code/inventory/data_inventory.py | |
| - name: Combine all measure_info into measure_info_all (this is the current state, not the known correct state) | |
| run: | | |
| python code/combine_measure_info.py | |
| - name: Run geographies list | |
| run: | | |
| python code/inventory/geographies_list.py | |
| - name: Adding index.html with reference to all the sites | |
| run: | | |
| rm docs/index.html | |
| printf "<h3>Data Commons: Test and Inventory Results</h3>" >> docs/index.html | |
| find docs -name "*.html" | cut -c 5- > docs/temp | |
| printf "<h4>Code Tests</h4>" >> docs/index.html | |
| printf "<ol>\n" >> docs/index.html | |
| cat docs/temp | while read line; do if echo ${line} | grep "test_code"; then printf "\t<li><a href='https://uva-bi-sdad.github.io/sdc.all_dev/${line}'> $line </a></li>\n" >> docs/index.html; fi; done | |
| printf "</ol>\n" >> docs/index.html | |
| printf "<h4>Data Tests</h4>" >> docs/index.html | |
| printf "<ol>\n" >> docs/index.html | |
| cat docs/temp | while read line; do if echo ${line} | grep "test_data"; then printf "\t<li><a href='https://uva-bi-sdad.github.io/sdc.all_dev/${line}'> $line </a></li>\n" >> docs/index.html; fi; done | |
| printf "</ol>\n" >> docs/index.html | |
| printf "<h4>File Name Tests</h4>" >> docs/index.html | |
| printf "<ol>\n" >> docs/index.html | |
| cat docs/temp | while read line; do if echo ${line} | grep "test_file_name"; then printf "\t<li><a href='https://uva-bi-sdad.github.io/sdc.all_dev/${line}'> $line </a></li>\n" >> docs/index.html; fi; done | |
| printf "</ol>\n" >> docs/index.html | |
| printf "<h4>Measure Info Tests</h4>" >> docs/index.html | |
| printf "<ol>\n" >> docs/index.html | |
| cat docs/temp | while read line; do if echo ${line} | grep "test_measure_info"; then printf "\t<li><a href='https://uva-bi-sdad.github.io/sdc.all_dev/${line}'> $line </a></li>\n" >> docs/index.html; fi; done | |
| printf "</ol>\n" >> docs/index.html | |
| printf "<h4>Inventory Reports</h4>" >> docs/index.html | |
| printf "<ol>\n" >> docs/index.html | |
| cat docs/temp | while read line; do if echo ${line} | grep "inventory"; then printf "\t<li><a href='https://uva-bi-sdad.github.io/sdc.all_dev/${line}'> $line </a></li>\n" >> docs/index.html; fi; done | |
| printf "</ol>\n" >> docs/index.html | |
| rm docs/temp | |
| - name: Commit the results | |
| run: | | |
| git config --local user.email "[email protected]" | |
| git config --local user.name "GitHub Actions" | |
| git add . | |
| git commit -m "Automated manifest update" | |
| - name: Push changes to current repository | |
| uses: ad-m/github-push-action@master | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| branch: ${{ github.ref }} | |
| - name: Remove github things # Required so that you can push to another directory | |
| run: | | |
| rm -rf .git | |
| - name: Remove github submodules # Required so that you can push to another directory | |
| run: | | |
| rm .gitmodules | |
| - name: Remove github workflow # Required so that you can push to another directory | |
| run: | | |
| rm -rf .github | |
| - name: Push directory to another repository | |
| uses: cpina/github-action-push-to-another-repository@main | |
| env: | |
| SSH_DEPLOY_KEY: ${{ secrets.SSH_DEPLOY_KEY }} | |
| with: | |
| source-directory: . | |
| destination-github-username: 'uva-bi-sdad' | |
| destination-repository-name: 'sdc.all' | |
| target-branch: main | |
| # Running the GitHub pages here so that you don't need to run runners twice | |
| - name: Setup Pages | |
| uses: actions/configure-pages@v3 | |
| - name: Upload artifact | |
| uses: actions/upload-pages-artifact@v2 | |
| with: | |
| path: '${{ github.workspace }}/docs' | |
| - name: Deploy to GitHub Pages | |
| id: deployment | |
| uses: actions/deploy-pages@v2 | |
| - name: Generate a measures folder and export all the data there | |
| run: mkdir -p measures | |
| - name: Check out editor repository code | |
| uses: actions/checkout@master | |
| with: | |
| repository: uva-bi-sdad/sdc.editor | |
| path: ${{ github.workspace }}/sdc.editor | |
| - name: List files in the repository (Useful for debugging) | |
| run: | | |
| ls -la ${{ github.workspace }}/sdc.editor | |
| - name: Install requirements for the editor | |
| run: | | |
| pip install -r ${{ github.workspace }}/sdc.editor/code/requirements.txt | |
| - name: Copy over a measure_info_all.json file | |
| run: | | |
| cp ${{ github.workspace }}/data/measure_info_all.json ${{ github.workspace }}/measures | |
| - name: Generate the measures data | |
| run: | | |
| python ${{ github.workspace }}/sdc.editor/code/sdc.all_edit_combine_split_by_variable.py -i ${{ github.workspace }} -o ${{ github.workspace }}/measures | |
| - name: Push directory to another repository | |
| uses: cpina/github-action-push-to-another-repository@main | |
| env: | |
| SSH_DEPLOY_KEY: ${{ secrets.VARIABLES_DEPLOY_KEY }} | |
| with: | |
| source-directory: measures | |
| destination-github-username: 'uva-bi-sdad' | |
| destination-repository-name: 'sdc.measures' | |
| target-branch: main | |
| on_fail: | |
| if: ${{ failure() }} # still push the total public one to sdc.all on fail | |
| needs: housekeeping | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repository and submodules | |
| uses: actions/checkout@master | |
| - name: Checkout latest submodules | |
| run: git submodule update --init --recursive --remote | |
| - name: Remove github things # Required so that you can push to another directory | |
| run: | | |
| rm -rf .git | |
| - name: Remove github submodules # Required so that you can push to another directory | |
| run: | | |
| rm .gitmodules | |
| - name: Remove github workflow # Required so that you can push to another directory | |
| run: | | |
| rm -rf .github | |
| - name: Push directory to another repository | |
| uses: cpina/github-action-push-to-another-repository@main | |
| env: | |
| SSH_DEPLOY_KEY: ${{ secrets.SSH_DEPLOY_KEY }} | |
| with: | |
| source-directory: . | |
| destination-github-username: 'uva-bi-sdad' | |
| destination-repository-name: 'sdc.all' | |
| target-branch: main |