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bwakit-GRCh38-resources

Resources for building GRCh38 FASTAs for BWA.

Also includes the following chain files for CrossMap liftover procedures:

  • from HG38 notation (UCSC) to GRCh38 notation (NCBI, Ensembl)
  • from GRCh38 (NCBI, Ensembl) notation to HG38 (UCSC) notation
  • from GRCh37 (NCBI, Ensembl) notation to HG19 (UCSC) notation, with added mitochondrial chromosome
  • mitochondrial chromosome only, from GRCh37 notation (MT - NCBI, Ensembl) to HG19 notation (chrM - UCSC).

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Resources for building GRCh38 FASTAs for BWA

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