Added setup section on using github

[alexiswl]

A little meaty, but github doesn't support passwords on git pushes now so need to go the key route

[github-actions]

Thank you!

Thank you for your pull request 😃

🤖 This automated message can help you check the rendered files in your submission for clarity. If you have any questions, please feel free to open an issue in {sandpaper}.

If you have files that automatically render output (e.g. R Markdown), then you should check for the following:

• 🎯 correct output
• 🖼️ correct figures
• ❓ new warnings
• ‼️ new errors

Rendered Changes

🔍 Inspect the changes: https://github.com/umccr/cwl-novice-tutorial/compare/md-outputs..md-outputs-PR-26

The following changes were observed in the rendered markdown documents:

 files/data_setup.Rmd   |  35 +++++++++++++++--
 files/github.Rmd (new) |  67 +++++++++++++++++++++++++++++++
 md5sum.txt             |   2 +-
 setup.md               | 105 +++++++++++++++++++++++++++++++++++++++++++++++--
 4 files changed, 200 insertions(+), 9 deletions(-)

What does this mean?

If you have source files that require output and figures to be generated (e.g. R Markdown), then it is important to make sure the generated figures and output are reproducible.

This output provides a way for you to inspect the output in a diff-friendly manner so that it's easy to see the changes that occur due to new software versions or randomisation.

⏱️ Updated at 2024-05-08 10:42:43 +0000

[skanwal]

That's a lot for the workshop purpose. Perhaps we can give them the option to do it in their own time.

[alexiswl]

That's a lot for the workshop purpose. Perhaps we can give them the option to do it in their own time.

Yes, let's see where everyone is at. This part is needed for #29