Add small fixes, pin peregrine to 2023.01, portal to master (#104)

* Add small fixes, pin peregrine to 2023.01, portal to master

.secrets.baseline

@@ -3,7 +3,7 @@
     "files": "^.secrets.baseline$",
     "lines": null
   },
-  "generated_at": "2023-03-03T20:55:43Z",
+  "generated_at": "2023-03-13T17:32:44Z",
   "plugins_used": [
     {
       "name": "AWSKeyDetector"
@@ -88,21 +88,20 @@
         "hashed_secret": "2546383b95bb44732e9be6a877fd476c0442fdab",
         "is_secret": false,
         "is_verified": false,
-        "line_number": 37,
+        "line_number": 38,
         "type": "Secret Keyword"
       },
       {
         "hashed_secret": "d84ce25b0f9bc2cc263006ae39453efb22cc2900",
         "is_secret": false,
         "is_verified": false,
-        "line_number": 39,
+        "line_number": 40,
         "type": "Secret Keyword"
       },
       {
-        "hashed_secret": "abb751db44bcfd1bb9d4ad53e40138422abd739e",
-        "is_secret": false,
+        "hashed_secret": "f09dd6e359833a12f48c4c4255d6e87a6e55cfe9",
         "is_verified": false,
-        "line_number": 58,
+        "line_number": 59,
         "type": "Secret Keyword"
       }
     ],
@@ -111,21 +110,20 @@
         "hashed_secret": "2546383b95bb44732e9be6a877fd476c0442fdab",
         "is_secret": false,
         "is_verified": false,
-        "line_number": 48,
+        "line_number": 49,
         "type": "Secret Keyword"
       },
       {
         "hashed_secret": "d84ce25b0f9bc2cc263006ae39453efb22cc2900",
         "is_secret": false,
         "is_verified": false,
-        "line_number": 50,
+        "line_number": 51,
         "type": "Secret Keyword"
       },
       {
-        "hashed_secret": "abb751db44bcfd1bb9d4ad53e40138422abd739e",
-        "is_secret": false,
+        "hashed_secret": "f09dd6e359833a12f48c4c4255d6e87a6e55cfe9",
         "is_verified": false,
-        "line_number": 77,
+        "line_number": 78,
         "type": "Secret Keyword"
       }
     ],
@@ -342,21 +340,20 @@
         "hashed_secret": "2546383b95bb44732e9be6a877fd476c0442fdab",
         "is_secret": false,
         "is_verified": false,
-        "line_number": 40,
+        "line_number": 41,
         "type": "Secret Keyword"
       },
       {
         "hashed_secret": "d84ce25b0f9bc2cc263006ae39453efb22cc2900",
         "is_secret": false,
         "is_verified": false,
-        "line_number": 42,
+        "line_number": 43,
         "type": "Secret Keyword"
       },
       {
-        "hashed_secret": "abb751db44bcfd1bb9d4ad53e40138422abd739e",
-        "is_secret": false,
+        "hashed_secret": "f09dd6e359833a12f48c4c4255d6e87a6e55cfe9",
         "is_verified": false,
-        "line_number": 60,
+        "line_number": 61,
         "type": "Secret Keyword"
       }
     ],
@@ -392,21 +389,20 @@
         "hashed_secret": "2546383b95bb44732e9be6a877fd476c0442fdab",
         "is_secret": false,
         "is_verified": false,
-        "line_number": 51,
+        "line_number": 52,
         "type": "Secret Keyword"
       },
       {
         "hashed_secret": "d84ce25b0f9bc2cc263006ae39453efb22cc2900",
         "is_secret": false,
         "is_verified": false,
-        "line_number": 53,
+        "line_number": 54,
         "type": "Secret Keyword"
       },
       {
-        "hashed_secret": "abb751db44bcfd1bb9d4ad53e40138422abd739e",
-        "is_secret": false,
+        "hashed_secret": "f09dd6e359833a12f48c4c4255d6e87a6e55cfe9",
         "is_verified": false,
-        "line_number": 78,
+        "line_number": 79,
         "type": "Secret Keyword"
       }
     ],
@@ -415,21 +411,20 @@
         "hashed_secret": "2546383b95bb44732e9be6a877fd476c0442fdab",
         "is_secret": false,
         "is_verified": false,
-        "line_number": 40,
+        "line_number": 41,
         "type": "Secret Keyword"
       },
       {
         "hashed_secret": "d84ce25b0f9bc2cc263006ae39453efb22cc2900",
         "is_secret": false,
         "is_verified": false,
-        "line_number": 42,
+        "line_number": 43,
         "type": "Secret Keyword"
       },
       {
-        "hashed_secret": "abb751db44bcfd1bb9d4ad53e40138422abd739e",
-        "is_secret": false,
+        "hashed_secret": "f09dd6e359833a12f48c4c4255d6e87a6e55cfe9",
         "is_verified": false,
-        "line_number": 60,
+        "line_number": 61,
         "type": "Secret Keyword"
       }
     ],
@@ -508,13 +503,13 @@
       {
         "hashed_secret": "08eeb737b239bdb7362a875b90e22c10b8826b20",
         "is_verified": false,
-        "line_number": 418,
+        "line_number": 417,
         "type": "Base64 High Entropy String"
       },
       {
         "hashed_secret": "eb9739c6625f06b4ab73035223366dda6262ae77",
         "is_verified": false,
-        "line_number": 421,
+        "line_number": 420,
         "type": "Base64 High Entropy String"
       }
     ],
@@ -523,21 +518,20 @@
         "hashed_secret": "2546383b95bb44732e9be6a877fd476c0442fdab",
         "is_secret": false,
         "is_verified": false,
-        "line_number": 49,
+        "line_number": 50,
         "type": "Secret Keyword"
       },
       {
         "hashed_secret": "d84ce25b0f9bc2cc263006ae39453efb22cc2900",
         "is_secret": false,
         "is_verified": false,
-        "line_number": 51,
+        "line_number": 52,
         "type": "Secret Keyword"
       },
       {
-        "hashed_secret": "abb751db44bcfd1bb9d4ad53e40138422abd739e",
-        "is_secret": false,
+        "hashed_secret": "f09dd6e359833a12f48c4c4255d6e87a6e55cfe9",
         "is_verified": false,
-        "line_number": 72,
+        "line_number": 73,
         "type": "Secret Keyword"
       }
     ],
@@ -578,21 +572,20 @@
         "hashed_secret": "2546383b95bb44732e9be6a877fd476c0442fdab",
         "is_secret": false,
         "is_verified": false,
-        "line_number": 56,
+        "line_number": 57,
         "type": "Secret Keyword"
       },
       {
         "hashed_secret": "d84ce25b0f9bc2cc263006ae39453efb22cc2900",
         "is_secret": false,
         "is_verified": false,
-        "line_number": 58,
+        "line_number": 59,
         "type": "Secret Keyword"
       },
       {
-        "hashed_secret": "abb751db44bcfd1bb9d4ad53e40138422abd739e",
-        "is_secret": false,
+        "hashed_secret": "f09dd6e359833a12f48c4c4255d6e87a6e55cfe9",
         "is_verified": false,
-        "line_number": 80,
+        "line_number": 81,
         "type": "Secret Keyword"
       }
     ],
@@ -662,21 +655,20 @@
         "hashed_secret": "2546383b95bb44732e9be6a877fd476c0442fdab",
         "is_secret": false,
         "is_verified": false,
-        "line_number": 38,
+        "line_number": 39,
         "type": "Secret Keyword"
       },
       {
         "hashed_secret": "d84ce25b0f9bc2cc263006ae39453efb22cc2900",
         "is_secret": false,
         "is_verified": false,
-        "line_number": 40,
+        "line_number": 41,
         "type": "Secret Keyword"
       },
       {
-        "hashed_secret": "abb751db44bcfd1bb9d4ad53e40138422abd739e",
-        "is_secret": false,
+        "hashed_secret": "f09dd6e359833a12f48c4c4255d6e87a6e55cfe9",
         "is_verified": false,
-        "line_number": 66,
+        "line_number": 67,
         "type": "Secret Keyword"
       }
     ],
@@ -689,12 +681,11 @@
         "type": "Secret Keyword"
       }
     ],
-    "sample-values/values_aws_dev.yaml": [
+    "sample-values/values_local_dev.yaml": [
       {
-        "hashed_secret": "9b5925ea817163740dfb287a9894e8ab3aba2c18",
-        "is_secret": false,
+        "hashed_secret": "db2e3619772c67cb47128ab5111584c51db38510",
         "is_verified": false,
-        "line_number": 34,
+        "line_number": 25,
         "type": "Secret Keyword"
       }
     ],

docs/portal/Dockerfile

@@ -37,6 +37,7 @@ FROM nginx:latest
 
 COPY overrides/nginx.conf /etc/nginx/conf.d/default.conf
 COPY --from=builder /data-portal/build/*.js /data-portal/build/index.html /usr/share/nginx/html/
+COPY --from=builder /data-portal/data /usr/share/nginx/html/data
 COPY --from=builder /data-portal/src/img/ /usr/share/nginx/html/src/img/
 COPY --from=builder /data-portal/src/css/ /usr/share/nginx/html/src/css/
 

helm/gen3/Chart.yaml

@@ -9,15 +9,15 @@ dependencies:
   repository: "file://../ambassador"
   condition: ambassador.enabled
 - name: arborist
-  version: "0.1.3"
+  version: "0.1.4"
   repository: "file://../arborist"
   condition: arborist.enabled
 - name: argo-wrapper
   version: "0.1.0"
   repository: "file://../argo-wrapper"
   condition: argo-wrapper.enabled
 - name: audit
-  version: "0.1.3"
+  version: "0.1.4"
   repository: "file://../audit"
   condition: audit.enabled
 - name: aws-es-proxy
@@ -28,7 +28,7 @@ dependencies:
   version: 0.1.3
   repository: file://../common
 - name: fence
-  version: "0.1.3"
+  version: "0.1.4"
   repository: "file://../fence"
   condition: fence.enabled
 - name: guppy
@@ -40,47 +40,47 @@ dependencies:
   repository: "file://../hatchery"
   condition: hatchery.enabled
 - name: indexd
-  version: "0.1.3"
+  version: "0.1.4"
   repository: "file://../indexd"
   condition: indexd.enabled
 - name: manifestservice
   version: "0.1.2"
   repository: "file://../manifestservice"
   condition: manifestservice.enabled
 - name: metadata
-  version: "0.1.3"
+  version: "0.1.4"
   repository: "file://../metadata"
   condition: metadata.enabled
 - name: peregrine
-  version: "0.1.3"
+  version: "0.1.5"
   repository: "file://../peregrine"
   condition: peregrine.enabled
 - name: pidgin
   version: "0.1.3"
   repository: "file://../pidgin"
   condition: pidgin.enabled
 - name: portal
-  version: "0.1.1"
+  version: "0.1.2"
   repository: "file://../portal"
   condition: portal.enabled
 - name: requestor
-  version: "0.1.3"
+  version: "0.1.4"
   repository: "file://../requestor"
   condition: requestor.enabled
 - name: revproxy
-  version: "0.1.3"
+  version: "0.1.4"
   repository: "file://../revproxy"
   condition: revproxy.enabled
 - name: sheepdog
-  version: "0.1.3"
+  version: "0.1.4"
   repository: "file://../sheepdog"
   condition: sheepdog.enabled
 - name: ssjdispatcher
   version: "0.1.1"
   repository: "file://../ssjdispatcher"
   condition: ssjdispatcher.enabled
 - name: wts
-  version: "0.1.4"
+  version: "0.1.5"
   repository: "file://../wts"
   condition: wts.enabled
 
@@ -107,7 +107,7 @@ type: application
 # This is the chart version. This version number should be incremented each time you make changes
 # to the chart and its templates, including the app version.
 # Versions are expected to follow Semantic Versioning (https://semver.org/)
-version: 0.1.4
+version: 0.1.5
 
 # This is the version number of the application being deployed. This version number should be
 # incremented each time you make changes to the application. Versions are not expected to

helm/gen3/README.md

@@ -1,6 +1,6 @@
 # gen3
 
-![Version: 0.1.4](https://img.shields.io/badge/Version-0.1.4-informational?style=flat-square) ![Type: application](https://img.shields.io/badge/Type-application-informational?style=flat-square) ![AppVersion: master](https://img.shields.io/badge/AppVersion-master-informational?style=flat-square)
+![Version: 0.1.5](https://img.shields.io/badge/Version-0.1.5-informational?style=flat-square) ![Type: application](https://img.shields.io/badge/Type-application-informational?style=flat-square) ![AppVersion: master](https://img.shields.io/badge/AppVersion-master-informational?style=flat-square)
 
 Helm chart to deploy Gen3 Data Commons
 
@@ -19,26 +19,26 @@ Helm chart to deploy Gen3 Data Commons
 | Repository | Name | Version |
 |------------|------|---------|
 | file://../ambassador | ambassador | 0.1.3 |
-| file://../arborist | arborist | 0.1.3 |
+| file://../arborist | arborist | 0.1.4 |
 | file://../argo-wrapper | argo-wrapper | 0.1.0 |
-| file://../audit | audit | 0.1.3 |
+| file://../audit | audit | 0.1.4 |
 | file://../aws-es-proxy | aws-es-proxy | 0.1.2 |
 | file://../common | common | 0.1.3 |
 | file://../elasticsearch | elasticsearch | 0.1.1 |
-| file://../fence | fence | 0.1.3 |
+| file://../fence | fence | 0.1.4 |
 | file://../guppy | guppy | 0.1.3 |
 | file://../hatchery | hatchery | 0.1.2 |
-| file://../indexd | indexd | 0.1.3 |
+| file://../indexd | indexd | 0.1.4 |
 | file://../manifestservice | manifestservice | 0.1.2 |
-| file://../metadata | metadata | 0.1.3 |
-| file://../peregrine | peregrine | 0.1.3 |
+| file://../metadata | metadata | 0.1.4 |
+| file://../peregrine | peregrine | 0.1.5 |
 | file://../pidgin | pidgin | 0.1.3 |
-| file://../portal | portal | 0.1.1 |
-| file://../requestor | requestor | 0.1.3 |
-| file://../revproxy | revproxy | 0.1.3 |
-| file://../sheepdog | sheepdog | 0.1.3 |
+| file://../portal | portal | 0.1.2 |
+| file://../requestor | requestor | 0.1.4 |
+| file://../revproxy | revproxy | 0.1.4 |
+| file://../sheepdog | sheepdog | 0.1.4 |
 | file://../ssjdispatcher | ssjdispatcher | 0.1.1 |
-| file://../wts | wts | 0.1.4 |
+| file://../wts | wts | 0.1.5 |
 | https://charts.bitnami.com/bitnami | postgresql | 11.9.13 |
 
 ## Values