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| <!doctype html> | ||
| <html lang=en> | ||
| <title>Nextflow Workspace</title> | ||
| <link href="https://fonts.googleapis.com/icon?family=Source+Sans+Pro" | ||
| rel=stylesheet> | ||
| <style> | ||
| body { | ||
| font-family: "Source Sans Pro", sans-serif; | ||
| background: #f5f5f5; | ||
| margin: 0; | ||
| padding: 0 20px 20px 20px; | ||
| font-size: 14px; | ||
| line-height: 1.6em; | ||
| letter-spacing: .02rem | ||
| } | ||
|
|
||
| h1.header { | ||
| margin: 20px 10px 16px; | ||
| border-bottom: solid #421c52 2px; | ||
| font-size: 32px; | ||
| font-weight: 600; | ||
| line-height: 2em; | ||
| letter-spacing: 0; | ||
| color: #000 | ||
| } | ||
|
|
||
| .content { | ||
| padding: 10px | ||
| } | ||
| </style> | ||
| <h1 class=header>Welcome to the Nextflow Workspace</h1> | ||
| <div class=content> | ||
| <p><strong>This is your personal workspace. The "pd" folder represents your | ||
| persistent drive:</strong></p> | ||
| <ul> | ||
| <li>The files you save here will still be available when you come back | ||
| after terminating your workspace session. | ||
| <li>Any personal files outside of this folder will be lost. | ||
| </ul> | ||
| <h2 class=header>Get started with Nextflow</h2> | ||
| <p>If you are new to Nextflow, visit <a | ||
| href=https://www.nextflow.io>nextflow.io</a> for detailed information. | ||
| </p> | ||
| <p>This workspace is set up to run Nextflow workflows in AWS Batch. Your | ||
| Nextflow configuration must include the Batch queue, IAM role ARN and work | ||
| directory that were created for you automatically. The sample configuration | ||
| file will allow you to run simple workflows and can be adapted to your | ||
| needs. To get started: | ||
| </p> | ||
| <ul> | ||
| <li>Copy the contents of <a href="./data/sample-nextflow.config">your | ||
| sample configuration file</a> to a new "nextflow.config" file. | ||
| <li>Open a terminal through the "Launch" tab. | ||
| <li>Run the Hello World workflow in the terminal with command "nextflow | ||
| run hello". | ||
| </ul> | ||
| </div> |