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Fix Google Bucket Job #2686

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Fix Google Bucket Job #2686

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BinamB
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@BinamB BinamB commented Dec 12, 2024

Link to JIRA ticket if there is one: https://ctds-planx.atlassian.net/browse/DCF-1947
Needed to add gibberish-detector to pre-commit since pre-commit tries to call it but it doesn't automatically install it.

New Features

  • Add map_file option to validation
  • Add GDC_poject_map mount on Google Replication

Breaking Changes

Bug Fixes

Improvements

Dependency updates

  • Add gibberish-detector to pre-commit hook.

Deployment changes

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Please find the ci env pod logs here

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filepath $$\textcolor{#23d18b}{\tt{passed}}$$ $$\textcolor{#f14c4c}{\tt{failed}}$$ $$\textcolor{#ffa500}{\tt{skipped}}$$ SUBTOTAL
$$\textcolor{#23d18b}{\tt{tests/test\_oauth2.py}}$$ $$\textcolor{#23d18b}{\tt{15}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#23d18b}{\tt{15}}$$
$$\textcolor{#23d18b}{\tt{tests/test\_centralized\_auth.py}}$$ $$\textcolor{#23d18b}{\tt{16}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#23d18b}{\tt{16}}$$
$$\textcolor{#ffa500}{\tt{tests/test\_graph\_submit\_and\_query.py}}$$ $$\textcolor{#23d18b}{\tt{13}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#ffa500}{\tt{1}}$$ $$\textcolor{#ffa500}{\tt{14}}$$
$$\textcolor{#ffa500}{\tt{tests/test\_data\_upload.py}}$$ $$\textcolor{#23d18b}{\tt{8}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#ffa500}{\tt{1}}$$ $$\textcolor{#ffa500}{\tt{9}}$$
$$\textcolor{#23d18b}{\tt{tests/test\_guppy\_service.py}}$$ $$\textcolor{#23d18b}{\tt{8}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#23d18b}{\tt{8}}$$
$$\textcolor{#23d18b}{\tt{tests/test\_presigned\_url.py}}$$ $$\textcolor{#23d18b}{\tt{7}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#23d18b}{\tt{7}}$$
$$\textcolor{#f14c4c}{\tt{tests/test\_audit\_service.py}}$$ $$\textcolor{#23d18b}{\tt{4}}$$ $$\textcolor{#f14c4c}{\tt{1}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#f14c4c}{\tt{5}}$$
$$\textcolor{#23d18b}{\tt{tests/test\_requestor.py}}$$ $$\textcolor{#23d18b}{\tt{5}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#23d18b}{\tt{5}}$$
$$\textcolor{#23d18b}{\tt{tests/test\_user\_token.py}}$$ $$\textcolor{#23d18b}{\tt{5}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#23d18b}{\tt{5}}$$
$$\textcolor{#ffa500}{\tt{tests/test\_dbgap.py}}$$ $$\textcolor{#23d18b}{\tt{4}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#ffa500}{\tt{1}}$$ $$\textcolor{#ffa500}{\tt{5}}$$
$$\textcolor{#23d18b}{\tt{tests/test\_drs\_endpoint.py}}$$ $$\textcolor{#23d18b}{\tt{4}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#23d18b}{\tt{4}}$$
$$\textcolor{#23d18b}{\tt{tests/test\_ras\_authn.py}}$$ $$\textcolor{#23d18b}{\tt{3}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#23d18b}{\tt{3}}$$
$$\textcolor{#23d18b}{\tt{tests/test\_study\_viewer.py}}$$ $$\textcolor{#23d18b}{\tt{3}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#23d18b}{\tt{3}}$$
$$\textcolor{#23d18b}{\tt{tests/test\_discoverypage.py}}$$ $$\textcolor{#23d18b}{\tt{1}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#23d18b}{\tt{1}}$$
$$\textcolor{#23d18b}{\tt{tests/test\_workspace.py}}$$ $$\textcolor{#23d18b}{\tt{1}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#23d18b}{\tt{1}}$$
$$\textcolor{#23d18b}{\tt{tests/test\_login\_page.py}}$$ $$\textcolor{#23d18b}{\tt{2}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#23d18b}{\tt{2}}$$
$$\textcolor{#23d18b}{\tt{tests/test\_oidc\_client.py}}$$ $$\textcolor{#23d18b}{\tt{2}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#23d18b}{\tt{2}}$$
$$\textcolor{#23d18b}{\tt{tests/test\_indexing\_page.py}}$$ $$\textcolor{#23d18b}{\tt{2}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#23d18b}{\tt{2}}$$
$$\textcolor{#23d18b}{\tt{tests/test\_client\_credentials.py}}$$ $$\textcolor{#23d18b}{\tt{1}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#23d18b}{\tt{1}}$$
$$\textcolor{#23d18b}{\tt{tests/test\_aggregate\_mds.py}}$$ $$\textcolor{#23d18b}{\tt{1}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#23d18b}{\tt{1}}$$
$$\textcolor{#23d18b}{\tt{tests/test\_homepage.py}}$$ $$\textcolor{#23d18b}{\tt{1}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#23d18b}{\tt{1}}$$
$$\textcolor{#23d18b}{\tt{tests/test\_pfb\_export.py}}$$ $$\textcolor{#23d18b}{\tt{1}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#23d18b}{\tt{1}}$$
$$\textcolor{#23d18b}{\tt{tests/test\_manifest\_service.py}}$$ $$\textcolor{#23d18b}{\tt{1}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#23d18b}{\tt{1}}$$
$$\textcolor{#23d18b}{\tt{tests/test\_metadata\_ingestion.py}}$$ $$\textcolor{#23d18b}{\tt{1}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#23d18b}{\tt{1}}$$
$$\textcolor{#23d18b}{\tt{tests/test\_etl.py}}$$ $$\textcolor{#23d18b}{\tt{1}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#23d18b}{\tt{1}}$$
$$\textcolor{#23d18b}{\tt{tests/test\_gen3client.py}}$$ $$\textcolor{#23d18b}{\tt{1}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#23d18b}{\tt{1}}$$
$$\textcolor{#23d18b}{\tt{tests/test\_google\_data\_access.py}}$$ $$\textcolor{#23d18b}{\tt{1}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#23d18b}{\tt{1}}$$
$$\textcolor{#ffa500}{\tt{tests/test\_gen3ff\_landing\_page.py}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#ffa500}{\tt{2}}$$ $$\textcolor{#ffa500}{\tt{2}}$$
$$\textcolor{#ffa500}{\tt{tests/test\_register\_user.py}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#666666}{\tt{0}}$$ $$\textcolor{#ffa500}{\tt{2}}$$ $$\textcolor{#ffa500}{\tt{2}}$$
$$\textcolor{#f14c4c}{\tt{TOTAL}}$$ $$\textcolor{#23d18b}{\tt{112}}$$ $$\textcolor{#f14c4c}{\tt{1}}$$ $$\textcolor{#ffa500}{\tt{7}}$$ $$\textcolor{#f14c4c}{\tt{120}}$$

Please find the detailed integration test report here

Please find the ci env pod logs here

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Please find the ci env pod logs here

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@MaribelleHGomez MaribelleHGomez left a comment

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changes look good to me
I think we should add a note about why the mapping arg was added to the job for historical reference

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filepath $$\textcolor{#23d18b}{\tt{passed}}$$ SUBTOTAL
$$\textcolor{#23d18b}{\tt{tests/test\_audit\_service.py}}$$ $$\textcolor{#23d18b}{\tt{5}}$$ $$\textcolor{#23d18b}{\tt{5}}$$
$$\textcolor{#23d18b}{\tt{TOTAL}}$$ $$\textcolor{#23d18b}{\tt{5}}$$ $$\textcolor{#23d18b}{\tt{5}}$$

Please find the detailed integration test report here

Please find the ci env pod logs here

@MaribelleHGomez MaribelleHGomez dismissed their stale review December 18, 2024 19:01

removing approval until tests are fixed

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filepath $$\textcolor{#23d18b}{\tt{passed}}$$ SUBTOTAL
$$\textcolor{#23d18b}{\tt{tests/test\_audit\_service.py}}$$ $$\textcolor{#23d18b}{\tt{5}}$$ $$\textcolor{#23d18b}{\tt{5}}$$
$$\textcolor{#23d18b}{\tt{TOTAL}}$$ $$\textcolor{#23d18b}{\tt{5}}$$ $$\textcolor{#23d18b}{\tt{5}}$$

Please find the detailed integration test report here

Please find the ci env pod logs here

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