Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add supplementary files and update readme #184

Merged
merged 33 commits into from
Nov 6, 2023
Merged
Show file tree
Hide file tree
Changes from 10 commits
Commits
Show all changes
33 commits
Select commit Hold shift + click to select a range
3e415af
Update README.md
svchb Jun 21, 2023
78a9ece
Create AUTHORS.md
svchb Jun 21, 2023
9eb97b8
Create LICENSE.md
svchb Jun 21, 2023
8201e2b
Update LICENSE.md
svchb Jun 21, 2023
a902fb4
Update AUTHORS.md
svchb Oct 6, 2023
18bdc67
Merge branch 'main' into update-readme
svchb Oct 6, 2023
ce1b0d7
Update README.md
svchb Oct 6, 2023
4f33cbc
add all other files
svchb Oct 6, 2023
0d8f11e
ignore markdown files for ci run
svchb Oct 6, 2023
3ed6a51
Update README.md
svchb Oct 11, 2023
98f7313
Update AUTHORS.md
svchb Oct 13, 2023
560bd37
Update NEWS.md
svchb Oct 13, 2023
9b95b75
Update README.md
svchb Oct 23, 2023
0ee4ab4
Update README.md
svchb Oct 23, 2023
89eeb14
Update README.md
svchb Oct 23, 2023
cead136
Update README.md
svchb Oct 23, 2023
101b8a0
Merge branch 'main' into update-readme
svchb Oct 23, 2023
bb9e104
Update README.md
svchb Oct 26, 2023
8282683
add some example pictures
svchb Oct 26, 2023
21ad885
Update README.md
svchb Oct 26, 2023
5bfe9e4
Update README.md
svchb Nov 1, 2023
52d940b
Update NEWS.md
svchb Nov 1, 2023
6d7a548
Update NEWS.md
svchb Nov 1, 2023
f376692
Update NEWS.md
svchb Nov 1, 2023
21514ef
Update README.md
svchb Nov 1, 2023
7863be5
remove package registry info
svchb Nov 1, 2023
a545938
Update README.md
svchb Nov 1, 2023
c3da424
Update README.md
svchb Nov 1, 2023
a27865f
Merge branch 'main' into update-readme
svchb Nov 1, 2023
3b82cc9
Update NEWS.md
svchb Nov 1, 2023
d51740d
Release information
svchb Nov 1, 2023
ce2ad4c
Update NEWS.md
svchb Nov 3, 2023
759fe80
Merge branch 'main' into update-readme
efaulhaber Nov 6, 2023
File filter

Filter by extension

Filter by extension


Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
19 changes: 19 additions & 0 deletions .github/workflows/ci.yml
Original file line number Diff line number Diff line change
Expand Up @@ -4,9 +4,28 @@ on:
push:
branches:
- main
paths-ignore:
- 'AUTHORS.md'
- 'CITATION.bib'
- 'CONTRIBUTING.md'
- 'LICENSE.md'
- 'NEWS.md'
- 'README.md'
- '.github/workflows/CompatHelper.yml'
- 'docs/**'
pull_request:
paths-ignore:
- 'AUTHORS.md'
- 'CITATION.bib'
- 'CONTRIBUTING.md'
- 'LICENSE.md'
- 'NEWS.md'
- 'README.md'
- '.github/workflows/CompatHelper.yml'
- 'docs/**'
workflow_dispatch:


# Cancel redundant CI tests automatically
concurrency:
group: ${{ github.workflow }}-${{ github.ref }}
Expand Down
25 changes: 25 additions & 0 deletions AUTHORS.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,25 @@
# Authors

TrixiParticles.jl's development is coordinated by a group of *principal developers*,
who are also its main contributors and who can be contacted in case of
questions about TrixiParticles.jl. In addition, there are *contributors* who have
provided substantial additions or modifications. Together, these two groups form
"The TrixiParticles.jl Authors" as mentioned in the [LICENSE.md](LICENSE.md) file.

## Principal Developers
* [Erik Faulhaber](https://www.mi.uni-koeln.de/NumSim/erik-faulhaber/),
University of Cologne, Germany
* [Niklas Neher](https://www.ihr.uni-stuttgart.de/institut/team/Neher-00004/),
High-Performance Computing Center Stuttgart (HLRS), Germany
* [Sven Berger](https://www.hereon.de/institutes/surface_science/interface_modeling/team/098972/index.php.de),
Helmholtz Center Hereon, Germany

## Contributors
The following people contributed major additions or modifications to Trixi.jl and
svchb marked this conversation as resolved.
Show resolved Hide resolved
are listed in alphabetical order:
* Sven Berger
* Erik Faulhaber
* Gregor Gassner
* Niklas Neher
* Hendrik Ranocha
* Michael Schlottke-Lakemper
131 changes: 131 additions & 0 deletions CODE_OF_CONDUCT.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,131 @@
# Contributor Covenant Code of Conduct
svchb marked this conversation as resolved.
Show resolved Hide resolved

## Our Pledge

We as members, contributors, and leaders pledge to make participation in our
community a harassment-free experience for everyone, regardless of age, body
size, visible or invisible disability, ethnicity, sex characteristics, gender
identity and expression, level of experience, education, socio-economic status,
nationality, personal appearance, race, religion, or sexual identity
and orientation.

We pledge to act and interact in ways that contribute to an open, welcoming,
diverse, inclusive, and healthy community.

## Our Standards

Examples of behavior that contributes to a positive environment for our
community include:

* Demonstrating empathy and kindness toward other people
* Being respectful of differing opinions, viewpoints, and experiences
* Giving and gracefully accepting constructive feedback
* Accepting responsibility and apologizing to those affected by our mistakes,
and learning from the experience
* Focusing on what is best not just for us as individuals, but for the
overall community

Examples of unacceptable behavior include:

* The use of sexualized language or imagery, and sexual attention or
advances of any kind
* Trolling, insulting or derogatory comments, and personal or political attacks
* Public or private harassment
* Publishing others' private information, such as a physical or email
address, without their explicit permission
* Other conduct which could reasonably be considered inappropriate in a
professional setting

## Enforcement Responsibilities

Community leaders are responsible for clarifying and enforcing our standards of
acceptable behavior and will take appropriate and fair corrective action in
response to any behavior that they deem inappropriate, threatening, offensive,
or harmful.

Community leaders have the right and responsibility to remove, edit, or reject
comments, commits, code, wiki edits, issues, and other contributions that are
not aligned to this Code of Conduct, and will communicate reasons for moderation
decisions when appropriate.

## Scope

This Code of Conduct applies within all community spaces, and also applies when
an individual is officially representing the community in public spaces.
Examples of representing our community include using an official e-mail address,
posting via an official social media account, or acting as an appointed
representative at an online or offline event.

## Enforcement

Instances of abusive, harassing, or otherwise unacceptable behavior may be
reported to
[Michael Schlottke-Lakemper](mailto:[email protected]),
[Sven Berger](mailto:[email protected]),
or any other of the principal developers responsible for enforcement listed in
[AUTHORS.md](AUTHORS.md).
All complaints will be reviewed and investigated promptly and fairly.

All community leaders are obligated to respect the privacy and security of the
reporter of any incident.

## Enforcement Guidelines

Community leaders will follow these Community Impact Guidelines in determining
the consequences for any action they deem in violation of this Code of Conduct:

### 1. Correction

**Community Impact**: Use of inappropriate language or other behavior deemed
unprofessional or unwelcome in the community.

**Consequence**: A private, written warning from community leaders, providing
clarity around the nature of the violation and an explanation of why the
behavior was inappropriate. A public apology may be requested.

### 2. Warning

**Community Impact**: A violation through a single incident or series
of actions.

**Consequence**: A warning with consequences for continued behavior. No
interaction with the people involved, including unsolicited interaction with
those enforcing the Code of Conduct, for a specified period of time. This
includes avoiding interactions in community spaces as well as external channels
like social media. Violating these terms may lead to a temporary or
permanent ban.

### 3. Temporary Ban

**Community Impact**: A serious violation of community standards, including
sustained inappropriate behavior.

**Consequence**: A temporary ban from any sort of interaction or public
communication with the community for a specified period of time. No public or
private interaction with the people involved, including unsolicited interaction
with those enforcing the Code of Conduct, is allowed during this period.
Violating these terms may lead to a permanent ban.

### 4. Permanent Ban

**Community Impact**: Demonstrating a pattern of violation of community
standards, including sustained inappropriate behavior, harassment of an
individual, or aggression toward or disparagement of classes of individuals.

**Consequence**: A permanent ban from any sort of public interaction within
the community.

## Attribution

This Code of Conduct is adapted from the [Contributor Covenant][homepage],
version 2.0, available at
https://www.contributor-covenant.org/version/2/0/code_of_conduct.html.

Community Impact Guidelines were inspired by [Mozilla's code of conduct
enforcement ladder](https://github.com/mozilla/diversity).

[homepage]: https://www.contributor-covenant.org

For answers to common questions about this code of conduct, see the FAQ at
https://www.contributor-covenant.org/faq. Translations are available at
https://www.contributor-covenant.org/translations.
54 changes: 54 additions & 0 deletions CONTRIBUTING.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,54 @@
# Contributing

TrixiParticles.jl is an open-source project and we are very happy to accept contributions
from the community. Please feel free to open issues or submit patches (preferably
as pull requests) any time. For planned larger contributions, it is often
beneficial to get in contact with one of the principal developers first (see
[AUTHORS.md](AUTHORS.md)).

TrixiParticles.jl and its contributions are licensed under the MIT license (see
[LICENSE.md](LICENSE.md)). As a contributor, you certify that all your
contributions are in conformance with the *Developer Certificate of Origin
(Version 1.1)*, which is reproduced below.

## Developer Certificate of Origin (Version 1.1)
The following text was taken from
[https://developercertificate.org](https://developercertificate.org):

Developer Certificate of Origin
Version 1.1

Copyright (C) 2004, 2006 The Linux Foundation and its contributors.
1 Letterman Drive
Suite D4700
San Francisco, CA, 94129

Everyone is permitted to copy and distribute verbatim copies of this
license document, but changing it is not allowed.


Developer's Certificate of Origin 1.1

By making a contribution to this project, I certify that:

(a) The contribution was created in whole or in part by me and I
have the right to submit it under the open source license
indicated in the file; or

(b) The contribution is based upon previous work that, to the best
of my knowledge, is covered under an appropriate open source
license and I have the right under that license to submit that
work with modifications, whether created in whole or in part
by me, under the same open source license (unless I am
permitted to submit under a different license), as indicated
in the file; or

(c) The contribution was provided directly to me by some other
person who certified (a), (b) or (c) and I have not modified
it.

(d) I understand and agree that this project and the contribution
are public and that a record of the contribution (including all
personal information I submit with it, including my sign-off) is
maintained indefinitely and may be redistributed consistent with
this project or the open source license(s) involved.
21 changes: 21 additions & 0 deletions LICENSE.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,21 @@
MIT License

Copyright (c) 2023-present The TrixiParticles.jl Authors (see [AUTHORS.md](AUTHORS.md))

Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to deal
in the Software without restriction, including without limitation the rights
to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
copies of the Software, and to permit persons to whom the Software is
furnished to do so, subject to the following conditions:

The above copyright notice and this permission notice shall be included in all
copies or substantial portions of the Software.

THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
SOFTWARE.
39 changes: 39 additions & 0 deletions NEWS.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,39 @@
# Changelog

Trixi.jl follows the interpretation of [semantic versioning (semver)](https://julialang.github.io/Pkg.jl/dev/compatibility/#Version-specifier-format-1)
svchb marked this conversation as resolved.
Show resolved Hide resolved
used in the Julia ecosystem. Notable changes will be documented in this file for human readability.


## Version 0.1.x

### Highlights

### Added

### Removed

### Deprecated


## Pre Initial Release (v0.1.0)
This section summarizes the initial features that TrixiParticles.jl was released with.

### Highlights
#### EDAC
An implementation of EDAC (Entropically Damped Artificial Compressibility) was added,
which allows for more stable simulations compared to basic WCSPH and reduces spurious pressure oscillations.
This SPH scheme also features an implementation of TVF (Transport velocity formulation),
svchb marked this conversation as resolved.
Show resolved Hide resolved
which enables higher quality internal flow solutions.

#### WCSPH
An implementation of WCSPH (Weakly Compressible Smoothed Particle Hydrodynamics), which is the classical SPH approach.

Features:
- Correction schemes (Shepard (0. Order) ... MixedKernelGradient (1. Order))
- Density reinitialization
- Summation and Continuity equation density formulation
svchb marked this conversation as resolved.
Show resolved Hide resolved

#### TLSPH
An implementation of TLSPH (Total Lagrangian Smoothed Particle Hydrodynamics) for solid bodies enabling FSI (Fluid Structure Interactions).

svchb marked this conversation as resolved.
Show resolved Hide resolved

svchb marked this conversation as resolved.
Show resolved Hide resolved
73 changes: 73 additions & 0 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -3,3 +3,76 @@
[![CI](https://github.com/trixi-framework/TrixiParticles.jl/actions/workflows/ci.yml/badge.svg)](https://github.com/trixi-framework/TrixiParticles.jl/actions/workflows/ci.yml)
[![codecov](https://codecov.io/github/trixi-framework/TrixiParticles.jl/branch/main/graph/badge.svg?token=RDZXYbij0b)](https://codecov.io/github/trixi-framework/TrixiParticles.jl)
[![SciML Code Style](https://img.shields.io/static/v1?label=code%20style&message=SciML&color=9558b2&labelColor=389826)](https://github.com/SciML/SciMLStyle)
[![License: MIT](https://img.shields.io/badge/License-MIT-success.svg)](https://opensource.org/licenses/MIT)

[![Youtube](https://img.shields.io/youtube/channel/views/UCpd92vU2HjjTPup-AIN0pkg?style=social)](https://www.youtube.com/@trixi-framework)
[![Slack](https://img.shields.io/badge/chat-slack-e01e5a)](https://join.slack.com/t/trixi-framework/shared_invite/zt-sgkc6ppw-6OXJqZAD5SPjBYqLd8MU~g)
[![Downloads](https://shields.io/endpoint?url=https://pkgs.genieframework.com/api/v1/badge/TrixiParticles)](https://pkgs.genieframework.com?packages=TrixiParticles)
svchb marked this conversation as resolved.
Show resolved Hide resolved


TrixiParticles.jl is a code that implements particle based numerical methods for multiphysics applications.
svchb marked this conversation as resolved.
Show resolved Hide resolved

## Features
- Incompressible Navier-Stokes
- Methods: WCSPH, EDAC
- Solid-body mechanics
- Methods: TLSPH
svchb marked this conversation as resolved.
Show resolved Hide resolved
- Fluid-Structure Interaction
- Output formats:
- VTK

## Examples

## Installation
If you have not yet installed Julia, please [follow the instructions for your
operating system](https://julialang.org/downloads/platform/). TrixiParticles.jl works
with Julia v1.9 and newer. We recommend using the latest stable release of Julia.

### For users
TrixiParticles.jl is a registered Julia package. Hence, you
svchb marked this conversation as resolved.
Show resolved Hide resolved
can install TrixiParticles.jl by executing the following commands in the Julia REPL:
```julia
julia> using Pkg

julia> Pkg.add(["TrixiParticles"])
svchb marked this conversation as resolved.
Show resolved Hide resolved
svchb marked this conversation as resolved.
Show resolved Hide resolved
```

### For developers
If you plan on editing Trixi.jl itself, you can download TrixiParticles.jl locally and use the
svchb marked this conversation as resolved.
Show resolved Hide resolved
code from the cloned directory:
```bash
git clone [email protected]:trixi-framework/TrixiParticles.jl.git
cd TrixiParticles.jl
```
If you installed Trixi.jl this way, you always have to start Julia with the `--project`
svchb marked this conversation as resolved.
Show resolved Hide resolved
flag set to your `run` directory, e.g.,
```bash
julia --project=.
```
svchb marked this conversation as resolved.
Show resolved Hide resolved
## Documentation

## Publications

## Cite Us
svchb marked this conversation as resolved.
Show resolved Hide resolved

## Authors
TrixiParticles.jl was created by Erik Faulhaber (University of Cologne), Niklas Neher (HLRS) and Sven Berger (hereon).
The full list of contributors can be found in [AUTHORS.md](AUTHORS.md).

## License and contributing
TrixiParticles.jl is licensed under the MIT license (see [LICENSE.md](LICENSE.md)). Since TrixiParticles.jl is
an open-source project, we are very happy to accept contributions from the
community. Please refer to [CONTRIBUTING.md](CONTRIBUTING.md) for more details.
Note that we strive to be a friendly, inclusive open-source community and ask all members
of our community to adhere to our [`CODE_OF_CONDUCT.md`](CODE_OF_CONDUCT.md).
To get in touch with the developers,
[join us on Slack](https://join.slack.com/t/trixi-framework/shared_invite/zt-sgkc6ppw-6OXJqZAD5SPjBYqLd8MU~g)
or [create an issue](https://github.com/trixi-framework/TrixiParticles.jl/issues/new).

## Acknowledgments
<p align="center">
svchb marked this conversation as resolved.
Show resolved Hide resolved
<img align="middle" src="https://github.com/svchb/TrixiParticles.jl/assets/10238714/e6c56282-b905-4499-8b88-e3b2c8f54545.jpg" width=20%/>&nbsp;&nbsp;&nbsp;
<img align="middle" src="https://github.com/svchb/TrixiParticles.jl/assets/10238714/06aac9fa-a446-4e7b-91e7-4faeeacb9813.jpg" width=20%/>&nbsp;&nbsp;&nbsp;
</p>

The project has benefited from funding from [hereon](https://www.hereon.de/) and [HIRSE](https://www.helmholtz-hirse.de/).
svchb marked this conversation as resolved.
Show resolved Hide resolved