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Update taxonomy of expected outputs
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yangsophieee committed Nov 16, 2023
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15 changes: 7 additions & 8 deletions tests/testthat/examples/Test_2023_1/output/taxa.csv
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16 changes: 8 additions & 8 deletions tests/testthat/examples/Test_2023_2/output/taxa.csv
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Expand Up @@ -3,11 +3,11 @@ Acacia celsa,Acacia celsa,,Acacia,Fabaceae,species,APC,accepted,Magnoliidae,Qld,
Acronychia acidula,Acronychia acidula,,Acronychia,Rutaceae,species,APC,accepted,Magnoliidae,Qld,Acronychia acidula F.Muell.,https://id.biodiversity.org.au/node/apni/2913200,https://id.biodiversity.org.au/taxon/apni/51446847,https://id.biodiversity.org.au/name/apni/73794,Acronychia acidula,https://id.biodiversity.org.au/name/apni/73794,https://id.biodiversity.org.au/taxon/apni/51461748,,Acronychia acidula,native
Aleurites rockinghamensis,Aleurites rockinghamensis,,Aleurites,Euphorbiaceae,species,APC,accepted,Magnoliidae,Qld,Aleurites rockinghamensis (Baill.) P.I.Forst.,https://id.biodiversity.org.au/node/apni/2916622,https://id.biodiversity.org.au/node/apni/2900410,https://id.biodiversity.org.au/name/apni/171057,Aleurites rockinghamensis,https://id.biodiversity.org.au/name/apni/171057,https://id.biodiversity.org.au/taxon/apni/51442249,,Aleurites rockinghamensis,native
Alphitonia petriei,Alphitonia petriei,,Alphitonia,Rhamnaceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Alphitonia petriei Braid & C.T.White,https://id.biodiversity.org.au/node/apni/2887911,https://id.biodiversity.org.au/taxon/apni/51446205,https://id.biodiversity.org.au/name/apni/82935,Alphitonia petriei,https://id.biodiversity.org.au/name/apni/82935,https://id.biodiversity.org.au/taxon/apni/51446206,,Alphitonia petriei,native
Alstonia scholaris,Alstonia scholaris,,Alstonia,Apocynaceae,species,APC,accepted,Magnoliidae,Qld,Alstonia scholaris (L.) R.Br.,https://id.biodiversity.org.au/node/apni/2916809,https://id.biodiversity.org.au/node/apni/6684160,https://id.biodiversity.org.au/name/apni/83915,Alstonia scholaris,https://id.biodiversity.org.au/name/apni/83915,https://id.biodiversity.org.au/taxon/apni/51700686,,Alstonia scholaris,native
Alstonia scholaris,Alstonia scholaris,,Alstonia,Apocynaceae,species,APC,accepted,Magnoliidae,Qld,Alstonia scholaris (L.) R.Br.,https://id.biodiversity.org.au/node/apni/2916809,https://id.biodiversity.org.au/node/apni/6684160,https://id.biodiversity.org.au/name/apni/83915,Alstonia scholaris,https://id.biodiversity.org.au/name/apni/83915,https://id.biodiversity.org.au/taxon/apni/51736528,,Alstonia scholaris,native
Argyrodendron peralatum,Argyrodendron peralatum,,Argyrodendron,Malvaceae,species,APC,accepted,Magnoliidae,Qld,Argyrodendron peralatum (F.M.Bailey) Edlin ex I.H.Boas,https://id.biodiversity.org.au/node/apni/2915243,https://id.biodiversity.org.au/taxon/apni/51288410,https://id.biodiversity.org.au/name/apni/100216,Argyrodendron peralatum,https://id.biodiversity.org.au/name/apni/100216,https://id.biodiversity.org.au/taxon/apni/51439248,,Argyrodendron peralatum,native
Atractocarpus hirtus,Atractocarpus hirtus,,Atractocarpus,Rubiaceae,species,APC,accepted,Magnoliidae,Qld,Atractocarpus hirtus (F.Muell.) Puttock,https://id.biodiversity.org.au/node/apni/2910460,https://id.biodiversity.org.au/taxon/apni/51446611,https://id.biodiversity.org.au/name/apni/146883,Atractocarpus hirtus,https://id.biodiversity.org.au/name/apni/146883,https://id.biodiversity.org.au/taxon/apni/51446612,,Atractocarpus hirtus,native
Brombya platynema,Brombya platynema,,Brombya,Rutaceae,species,APC,accepted,Magnoliidae,Qld,Brombya platynema F.Muell.,https://id.biodiversity.org.au/node/apni/2890280,https://id.biodiversity.org.au/node/apni/7937668,https://id.biodiversity.org.au/name/apni/67607,Brombya platynema,https://id.biodiversity.org.au/name/apni/67607,https://id.biodiversity.org.au/taxon/apni/51461748,,Brombya platynema,native
Cardwellia sublimis,Cardwellia sublimis,,Cardwellia,Proteaceae,species,APC,accepted,Magnoliidae,Qld,Cardwellia sublimis F.Muell.,https://id.biodiversity.org.au/node/apni/2899253,https://id.biodiversity.org.au/node/apni/2908094,https://id.biodiversity.org.au/name/apni/109268,Cardwellia sublimis,https://id.biodiversity.org.au/name/apni/109268,https://id.biodiversity.org.au/taxon/apni/51614274,,Cardwellia sublimis,native
Cardwellia sublimis,Cardwellia sublimis,,Cardwellia,Proteaceae,species,APC,accepted,Magnoliidae,Qld,Cardwellia sublimis F.Muell.,https://id.biodiversity.org.au/node/apni/2899253,https://id.biodiversity.org.au/node/apni/2908094,https://id.biodiversity.org.au/name/apni/109268,Cardwellia sublimis,https://id.biodiversity.org.au/name/apni/109268,https://id.biodiversity.org.au/taxon/apni/51732901,,Cardwellia sublimis,native
Castanospermum australe,Castanospermum australe,,Castanospermum,Fabaceae,species,APC,accepted,Magnoliidae,"Qld, NSW, NI (doubtfully naturalised)",Castanospermum australe A.Cunn. ex Mudie,https://id.biodiversity.org.au/node/apni/2894943,https://id.biodiversity.org.au/node/apni/7226268,https://id.biodiversity.org.au/name/apni/196675,Castanospermum australe,https://id.biodiversity.org.au/name/apni/196675,https://id.biodiversity.org.au/taxon/apni/51702961,,Castanospermum australe,native and naturalised
Cleistanthus myrianthus,Cleistanthus myrianthus,,Cleistanthus,Phyllanthaceae,species,APC,accepted,Magnoliidae,Qld,Cleistanthus myrianthus (Hassk.) Kurz,https://id.biodiversity.org.au/node/apni/2897700,https://id.biodiversity.org.au/node/apni/2914326,https://id.biodiversity.org.au/name/apni/71354,Cleistanthus myrianthus,https://id.biodiversity.org.au/name/apni/71354,https://id.biodiversity.org.au/taxon/apni/51442162,,Cleistanthus myrianthus,native
Cryptocarya laevigata,Cryptocarya laevigata,,Cryptocarya,Lauraceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Cryptocarya laevigata Blume,https://id.biodiversity.org.au/node/apni/2903400,https://id.biodiversity.org.au/taxon/apni/51438401,https://id.biodiversity.org.au/name/apni/88410,Cryptocarya laevigata,https://id.biodiversity.org.au/name/apni/88410,https://id.biodiversity.org.au/taxon/apni/51438397,,Cryptocarya laevigata,native
Expand All @@ -33,14 +33,14 @@ Melicope elleryana,Melicope elleryana,,Melicope,Rutaceae,species,APC,accepted,Ma
Myristica insipida,Myristica insipida,,Myristica,Myristicaceae,species,APC,accepted,Magnoliidae,"WA, NT, Qld",Myristica insipida R.Br.,https://id.biodiversity.org.au/node/apni/2902429,https://id.biodiversity.org.au/node/apni/2895962,https://id.biodiversity.org.au/name/apni/86064,Myristica insipida,https://id.biodiversity.org.au/name/apni/86064,https://id.biodiversity.org.au/node/apni/2903136,,Myristica insipida,native
Neolitsea dealbata,Neolitsea dealbata,,Neolitsea,Lauraceae,species,APC,accepted,Magnoliidae,"Qld, NSW",Neolitsea dealbata (R.Br.) Merr.,https://id.biodiversity.org.au/node/apni/2910025,https://id.biodiversity.org.au/node/apni/2914447,https://id.biodiversity.org.au/name/apni/79589,Neolitsea dealbata,https://id.biodiversity.org.au/name/apni/79589,https://id.biodiversity.org.au/taxon/apni/51438397,,Neolitsea dealbata,native
Pittosporum rubiginosum,Pittosporum rubiginosum,,Pittosporum,Pittosporaceae,species,APC,accepted,Magnoliidae,Qld,Pittosporum rubiginosum A.Cunn.,https://id.biodiversity.org.au/node/apni/2887772,https://id.biodiversity.org.au/taxon/apni/51442349,https://id.biodiversity.org.au/name/apni/100119,Pittosporum rubiginosum,https://id.biodiversity.org.au/name/apni/100119,https://id.biodiversity.org.au/taxon/apni/51442315,,Pittosporum rubiginosum,native
Haplostichanthus sp Coop. Ck,Polyalthia submontana,,Polyalthia,Annonaceae,species,APC,accepted,Magnoliidae,Qld,Polyalthia submontana (Jessup) B.Xue & R.M.K.Saunders,https://id.biodiversity.org.au/taxon/apni/51613975,https://id.biodiversity.org.au/taxon/apni/51613976,https://id.biodiversity.org.au/name/apni/246294,Polyalthia submontana,https://id.biodiversity.org.au/name/apni/191525,https://id.biodiversity.org.au/taxon/apni/51613977,,Polyalthia submontana,native
Polyscias australiana,Polyscias australiana,,Polyscias,Araliaceae,species,APC,accepted,Magnoliidae,"NT, Qld",Polyscias australiana (F.Muell.) Philipson,https://id.biodiversity.org.au/node/apni/7223338,https://id.biodiversity.org.au/taxon/apni/51292784,https://id.biodiversity.org.au/name/apni/84802,Polyscias australiana,https://id.biodiversity.org.au/name/apni/84787,https://id.biodiversity.org.au/taxon/apni/51632289,,Polyscias australiana,native
Haplostichanthus sp Coop. Ck,Polyalthia submontana,,Polyalthia,Annonaceae,species,APC,accepted,Magnoliidae,Qld,Polyalthia submontana (Jessup) B.Xue & R.M.K.Saunders,https://id.biodiversity.org.au/taxon/apni/51735993,https://id.biodiversity.org.au/taxon/apni/51735989,https://id.biodiversity.org.au/name/apni/246294,Polyalthia submontana,https://id.biodiversity.org.au/name/apni/191525,https://id.biodiversity.org.au/taxon/apni/51735960,,Polyalthia submontana,native
Polyscias australiana,Polyscias australiana,,Polyscias,Araliaceae,species,APC,accepted,Magnoliidae,"NT, Qld",Polyscias australiana (F.Muell.) Philipson,https://id.biodiversity.org.au/node/apni/7223338,https://id.biodiversity.org.au/taxon/apni/51737050,https://id.biodiversity.org.au/name/apni/84802,Polyscias australiana,https://id.biodiversity.org.au/name/apni/84787,https://id.biodiversity.org.au/taxon/apni/51736765,,Polyscias australiana,native
Psychotria dallachiana,Psychotria dallachiana,,Psychotria,Rubiaceae,species,APC,accepted,Magnoliidae,Qld,Psychotria dallachiana Benth.,https://id.biodiversity.org.au/node/apni/2890013,https://id.biodiversity.org.au/taxon/apni/51446698,https://id.biodiversity.org.au/name/apni/89074,Psychotria dallachiana,https://id.biodiversity.org.au/name/apni/89074,https://id.biodiversity.org.au/taxon/apni/51446612,,Psychotria dallachiana,native
Psychotria sp Utchee Creek,Psychotria sp. Utchee Creek (H.Flecker NQNC5313),,Psychotria,Rubiaceae,species,APC,accepted,Magnoliidae,Qld,Psychotria sp. Utchee Creek (H.Flecker NQNC5313) Qld Herbarium,https://id.biodiversity.org.au/taxon/apni/51446727,https://id.biodiversity.org.au/taxon/apni/51446698,https://id.biodiversity.org.au/name/apni/218829,Psychotria sp. Utchee Creek (H.Flecker NQNC5313),https://id.biodiversity.org.au/name/apni/218829,https://id.biodiversity.org.au/taxon/apni/51446612,,Psychotria sp. Utchee Creek (H.Flecker NQNC5313),native
Rhodomyrtus trineura,Rhodomyrtus trineura,,Rhodomyrtus,Myrtaceae,species,APC,accepted,Magnoliidae,Qld,Rhodomyrtus trineura (F.Muell.) Benth.,https://id.biodiversity.org.au/taxon/apni/51441176,https://id.biodiversity.org.au/taxon/apni/51441177,https://id.biodiversity.org.au/name/apni/69289,Rhodomyrtus trineura,https://id.biodiversity.org.au/name/apni/69289,https://id.biodiversity.org.au/taxon/apni/51702983,,Rhodomyrtus trineura,native
Rhodomyrtus trineura,Rhodomyrtus trineura,,Rhodomyrtus,Myrtaceae,species,APC,accepted,Magnoliidae,Qld,Rhodomyrtus trineura (F.Muell.) Benth.,https://id.biodiversity.org.au/taxon/apni/51441176,https://id.biodiversity.org.au/taxon/apni/51441177,https://id.biodiversity.org.au/name/apni/69289,Rhodomyrtus trineura,https://id.biodiversity.org.au/name/apni/69289,https://id.biodiversity.org.au/taxon/apni/51738744,,Rhodomyrtus trineura,native
Rockinghamia angustifolia,Rockinghamia angustifolia,,Rockinghamia,Euphorbiaceae,species,APC,accepted,Magnoliidae,Qld,Rockinghamia angustifolia (Benth.) Airy Shaw,https://id.biodiversity.org.au/node/apni/2921179,https://id.biodiversity.org.au/node/apni/2892697,https://id.biodiversity.org.au/name/apni/61487,Rockinghamia angustifolia,https://id.biodiversity.org.au/name/apni/61487,https://id.biodiversity.org.au/taxon/apni/51442249,,Rockinghamia angustifolia,native
Quassia baileyana,Samadera baileyana,,Samadera,Simaroubaceae,species,APC,accepted,Magnoliidae,Qld,Samadera baileyana Oliv.,https://id.biodiversity.org.au/node/apni/2891526,https://id.biodiversity.org.au/node/apni/2900441,https://id.biodiversity.org.au/name/apni/60763,Samadera baileyana,https://id.biodiversity.org.au/name/apni/70084,https://id.biodiversity.org.au/taxon/apni/51316490,,Samadera baileyana,native
Acmena graveolens,Syzygium graveolens,,Syzygium,Myrtaceae,species,APC,accepted,Magnoliidae,Qld,Syzygium graveolens (F.M.Bailey) Craven & Biffin,https://id.biodiversity.org.au/node/apni/2920364,https://id.biodiversity.org.au/taxon/apni/51440383,https://id.biodiversity.org.au/name/apni/202985,Syzygium graveolens,https://id.biodiversity.org.au/name/apni/73535,https://id.biodiversity.org.au/taxon/apni/51702983,,Syzygium graveolens,native
Syzygium gustavioides,Syzygium gustavioides,,Syzygium,Myrtaceae,species,APC,accepted,Magnoliidae,Qld,Syzygium gustavioides (F.M.Bailey) B.Hyland,https://id.biodiversity.org.au/taxon/apni/51429676,https://id.biodiversity.org.au/taxon/apni/51440383,https://id.biodiversity.org.au/name/apni/64722,Syzygium gustavioides,https://id.biodiversity.org.au/name/apni/64722,https://id.biodiversity.org.au/taxon/apni/51702983,,Syzygium gustavioides,native
Syzygium sayeri,Syzygium sayeri,,Syzygium,Myrtaceae,species,APC,accepted,Magnoliidae,Qld,Syzygium sayeri (F.Muell.) B.Hyland,https://id.biodiversity.org.au/node/apni/2888968,https://id.biodiversity.org.au/taxon/apni/51440383,https://id.biodiversity.org.au/name/apni/64837,Syzygium sayeri,https://id.biodiversity.org.au/name/apni/64837,https://id.biodiversity.org.au/taxon/apni/51702983,,Syzygium sayeri,native
Acmena graveolens,Syzygium graveolens,,Syzygium,Myrtaceae,species,APC,accepted,Magnoliidae,Qld,Syzygium graveolens (F.M.Bailey) Craven & Biffin,https://id.biodiversity.org.au/node/apni/2920364,https://id.biodiversity.org.au/taxon/apni/51440383,https://id.biodiversity.org.au/name/apni/202985,Syzygium graveolens,https://id.biodiversity.org.au/name/apni/73535,https://id.biodiversity.org.au/taxon/apni/51738744,,Syzygium graveolens,native
Syzygium gustavioides,Syzygium gustavioides,,Syzygium,Myrtaceae,species,APC,accepted,Magnoliidae,Qld,Syzygium gustavioides (F.M.Bailey) B.Hyland,https://id.biodiversity.org.au/taxon/apni/51429676,https://id.biodiversity.org.au/taxon/apni/51440383,https://id.biodiversity.org.au/name/apni/64722,Syzygium gustavioides,https://id.biodiversity.org.au/name/apni/64722,https://id.biodiversity.org.au/taxon/apni/51738744,,Syzygium gustavioides,native
Syzygium sayeri,Syzygium sayeri,,Syzygium,Myrtaceae,species,APC,accepted,Magnoliidae,Qld,Syzygium sayeri (F.Muell.) B.Hyland,https://id.biodiversity.org.au/node/apni/2888968,https://id.biodiversity.org.au/taxon/apni/51440383,https://id.biodiversity.org.au/name/apni/64837,Syzygium sayeri,https://id.biodiversity.org.au/name/apni/64837,https://id.biodiversity.org.au/taxon/apni/51738744,,Syzygium sayeri,native
Trema aspera,Trema tomentosa var. aspera,,Trema,Cannabaceae,variety,APC,accepted,Magnoliidae,"WA, Qld, NSW, Vic (presumed extinct)",Trema tomentosa var. aspera (Brongn.) Hewson,https://id.biodiversity.org.au/node/apni/2917190,https://id.biodiversity.org.au/node/apni/2913617,https://id.biodiversity.org.au/name/apni/206199,Trema tomentosa var. aspera,https://id.biodiversity.org.au/name/apni/101838,https://id.biodiversity.org.au/taxon/apni/51269919,Trema tomentosa var. aspera,Trema tomentosa,native
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