Lima - Demultiplex Barcoded PacBio Samples

A modular single-molecule analysis interface

File format agnostic low level, high performance API to read and process time-tagged-time resolved (TTTR) data for single-molecule and image spectroscopy (Sample data: https://gitlab.peulen.xyz/skf/tttr-data)

Burst analysis software for smFRET. **Moved to OpenSMFS organization**

Detection of Molecules plugin for ImageJ, Utrecht University

Burst analysis software for single and multi-spot single-molecule FRET (smFRET) data.

Implements a modified version of the CUSUM algorithm for robust detection of step-like changes time-series data

MATLAB package to analyze single-molecule FRET data

Single-molecule force spectroscopy calibration

A simulator for single molecule FRET experiments of freely diffusing particles.

Single Molecule Fluorescence Simulator Toolkit

ASCAM is Advanced Single Channel Analysis for Mac (and others)

Maximum likelihood fits for low photon count data - For active develeopment visit gitlab.peulen.xyz

This is a repo for a Python based application to open SMS .h5 files, and perform the initial analysis and exporting.

mdtraj_fps ia a command line tool to calculate FRET observables form MD-trajectories

Data analysis for Ingargiola et al. PLOS ONE (2017) doi:10.1101/085027

Single-moecule imaging and computation with RNA

single molecule tracking

Fitting DNA single-molecule force-extension curves in MATLAB

This Python library is designed to enhance the performance of single-particle tracking (SPT) algorithms by leveraging Cython.