COBRApy is a package for constraint-based modeling of metabolic networks.

💎 An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data

CarveMe: genome-scale metabolic model reconstruction

single cell Flux Estimation Analysis (scFEA) Try the below web server!

ReFramed: metabolic modeling package

Multi-dimensional, trans-omics metabolic maps.

Visualization and analysis platform for metabolic data and network pattern recognition

A COBRApy extension for genome-scale models of metabolism and expression (ME-models)

EMBL GEMs: A collection of GEnome-scale Models for bacterial species

framed: a metabolic modeling package for python

A Python parser for the BRENDA database

Simple metabolic calculator to weight loss

An implementation of genome-scale model reconstruction using Cost Optimization Reaction Dependency Assessment by Schultz et. al

R package to Import and Modify SVG (XML) Graphic Files

Open source genome-scale metabolic models of human and model animals

Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)

A python library for single-cell metabolism data analysis.

Teaching materials for SymbNET course: from MAGs to GEMs

Genome-scale metabolic model of Methylococcus capsulatus.