Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement

Renders SVG schema of SARS-CoV-2 clade as defined by Nextstrain

Yet Another TAxonomy Handler.

Flu clade and mutation frequencies

A lightweight tool to find clusters of samples within a phylogeny.

This script allows to get Enterobacter cloacae complex hsp60 cluster from a multi-Fasta file

Code for calculating correlations between clade indicators.