Implement chunking #4
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- Add `SEQKIT_SPLIT2` to split FASTQ file for `align_short`, `align_pacbio` and `align_ont` - Add `SAMTOOLS_SPLIT` to split CRAM/BAM file for `align_short` if input type contains CRAM
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PR checklist
nf-core lint).nextflow run . -profile test,docker --outdir <OUTDIR>).docs/usage.mdis updated.docs/output.mdis updated.CHANGELOG.mdis updated.README.mdis updated (including new tool citations and authors/contributors).