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Minor style tweaks
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@freeman-lab
freeman-lab committed Sep 30, 2015
1 parent e903f3c commit 3265d44
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66 changes: 34 additions & 32 deletions images/title.svg
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99 changes: 49 additions & 50 deletions index.html
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<meta charset="utf-8">
<meta http-equiv="X-UA-Compatible" content="chrome=1">
<title>thunder</title>
<link rel="stylesheet" href="stylesheets/bootstrap.min.css">
<link rel="stylesheet" href="http://yandex.st/highlightjs/7.5/styles/tomorrow.min.css">
<link rel="stylesheet" href="stylesheets/style.css">
<link rel="stylesheet" href="stylesheets/shelves.css">
<link href="http://fonts.googleapis.com/css?family=Lato:100,300,400,700,900,100italic,300italic,400italic,700italic,900italic" rel="stylesheet" type="text/css">
<link href='http://fonts.googleapis.com/css?family=Abel' rel='stylesheet' type='text/css'>
<link rel="icon" sizes="16x16 32x32" href="images/favicon.ico?v=2">
<script src="http://yandex.st/highlightjs/7.5/highlight.min.js"></script>
<script>hljs.initHighlightingOnLoad();</script>
<link href='http://fonts.googleapis.com/css?family=Source+Sans+Pro' rel='stylesheet' type='text/css'>
<link href="http://maxcdn.bootstrapcdn.com/font-awesome/4.1.0/css/font-awesome.min.css" rel="stylesheet">
<script src="https://ajax.googleapis.com/ajax/libs/jquery/1.7.1/jquery.min.js"></script>
<script src="javascripts/respond.js"></script>
<script src="javascripts/bootstrap.min.js"></script>
<!--[if lt IE 9]>
<script src="//html5shiv.googlecode.com/svn/trunk/html5.js"></script>
<![endif]-->
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</head>
<body>

<div section id='top'>
<div class='row' style='text-align: center'>
<img id="header" src="images/title.svg" style='opacity:0.5'>
</div>

<div class="navbar-header">
<a class="navbar-brand" href="/">
<img id="header" src="images/title.svg">
</a>
</div>


<div class="jumbotron">
<div class="container text-center" id="header-container">
<div class="row">
<div class="col-sm-10 col-sm-offset-1">
<h1 id="subheader">Large-scale analysis <br>of neural data</h1>
<a class="btn btn-lg btn-white-outline" data-remote="false"
data-target="#getting-started" href="#getting-started">Getting started</a>
<a class="btn btn-lg btn-white-outline" data-remote="false"
data-target="#foo" href="http://thunder-project.org/thunder/docs">Documentation</a>
<a class="btn btn-lg btn-white-outline" data-remote="false"
data-target="#foo" id='notebooks'>Live notebooks</a>
<a class="btn btn-lg btn-white-outline" data-remote="false"
data-target="#foo" href="http://research.janelia.org/zebrafish">Use case</a>
<div class='row'>
<div style="text-align: center" id="header-container">
<div class="row">
<h1 id="subheader">Large-scale image <br>and time series analysis</h1>
</div>
<div class='row' style='margin-bottom: 80px'>
<a class="btn btn-white-outline" data-remote="false"
data-target="#getting-started" href="#getting-started">Getting started</a>
<a class="btn btn-white-outline" data-remote="false"
data-target="#foo" href="http://thunder-project.org/thunder/docs">Documentation</a>
<a class="btn btn-white-outline" data-remote="false"
data-target="#foo" id='notebooks'>Live notebooks</a>
<a class="btn btn-white-outline" data-remote="false"
data-target="#foo" href="http://research.janelia.org/zebrafish">Use case</a>
</div>
</div>
</div>
</div>
</div>


<div section id="features">
<div class="container">
<div class="row">
<div class="col-md-4">
<h2 id="subtitle1"><i class="glyphicon glyphicon-flash"></i>&nbsp;&nbsp;Fast</h2>
<h3 id="subcontent">Lightning-fast analysis through the Spark cluster computing framework. Simple to run on a cluster with Amazon EC2.</h3>
<div class="column-4">
<h2 class='subtitle' id="subtitle1"><i class="fa fa-bolt"></i>&nbsp;&nbsp;Fast</h2>
<h3 class="subcontent">Lightning-fast analysis through the Spark cluster computing framework. Simple to run on a cluster with Amazon EC2.</h3>
</div>
<div class="col-md-4">
<h2 id="subtitle2"><i class="glyphicon glyphicon-play-circle"></i>&nbsp;&nbsp;Easy</h2>
<h3 id="subcontent">Run existing analyses or develop new ones. Try locally before deploying on a cluster. All in Python.</h3>
<div class="column-4">
<h2 class='subtitle' id="subtitle2"><i class="fa fa-play-circle-o"></i>&nbsp;&nbsp;Easy</h2>
<h3 class="subcontent">Run existing analyses or develop new ones. Try locally before deploying on a cluster. All in Python.</h3>
</div>
<div class="col-md-4">
<h2 id="subtitle3"><i class="glyphicon glyphicon-stats"></i>&nbsp;&nbsp;&nbsp;Interactive</h2>
<h3 id="subcontent">Run interactively in the iPython shell or notebook. Immediately inspect, visualize, and share results and analyses.</h3>
<div class="column-4">
<h2 class='subtitle' id="subtitle3"><i class="fa fa-bar-chart-o"></i>&nbsp;&nbsp;&nbsp;Interactive</h2>
<h3 class="subcontent">Run interactively in the Jupyter notebook. Immediately inspect, visualize, and share results and analyses.</h3>
</div>
</div>
</div>
</div>

<div section id="getting-started">
<div class="container">
<h1>Getting started</h1>
<p>Most computers can get started locally or on the cloud in just a few simple steps.</p>
<br>
<div class="row">
<div class="col-md-4">
<h1>Getting started</h1>
<p>Most computers can get started locally or on the cloud in just a few simple steps.</p>
<br>
</div>
<div class="row">
<div class="column-4">
<p><b>1.</b> Download the <a href='http://d3kbcqa49mib13.cloudfront.net/spark-1.1.0-bin-hadoop1.tgz'>latest</a>, pre-built version of <b>Spark</b>. Then set an environmental variable by typing this into the terminal.</p>
<pre><code class="bash">export SPARK_HOME=your/path/to/spark
</pre></code>
</div>
<div class="col-md-4">
<div class="column-4">
<p><b>2.</b> Install <b>Thunder</b>. If you are already using Python just type this line into the terminal. (If not, get <a href='https://store.continuum.io/cshop/anaconda/'>Anaconda</a>.)</p>
<pre><code class="bash">pip install thunder-python
</pre></code>
</div>
<div class="col-md-4">
<div class="column-4">
<p><b>3.</b> Start <b>Thunder</b> and try an analysis!</p>
<pre><code class="bash">thunder
>> from thunder import ICA
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</div>
</div>
<br>
<div class="row">
<hr>
</div>
<br>
<div class="row">
<h3>Running locally is great for testing, but for real analysis you'll want a cluster</h3>
<br>
</div>
<div class="row">
<div class="col-md-2">
<div class="column-2">
<p><b>1.</b> Set up an AWS account, get your secret access key, and create a key pair (see the <a href="http://thunder-project.github.io/thunder/install_ec2.html">documentation</a> for more details).</p>
</div>
<div class="col-md-5">
<div class="column-5">
<p><b>2.</b> Use this command to launch a 5 node cluster named "test". It will just take a few minutes to start</p>
<pre><code class="bash">thunder-ec2 -k mykey -i mykey.pem -s 5 launch test
</pre></code>
</div>
<div class="col-md-5">
<div class="column-5">
<p><b>3.</b> Once the cluster launches, login and start</p>
<pre><code class="bash">thunder-ec2 -k mykey -i mykey.pem login test
$ thunder
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</div>
<br>
<br>
<h2 id="want-more">Read the <a href='http://thunder-project.github.io/thunder'>documentation</a> for more info or <a href='https://github.com/thunder-project/thunder/'>fork the repo</a> and contribute an analysis!</h2>
<h2 id="want-more">Read the <a href='http://thunder-project.github.io/thunder'>documentation</a> for more info or <a href='https://github.com/thunder-project/thunder/'>fork the repo</a> and contribute!</h2>
<br>
<br>
</div>



</div>
</div>



Expand All @@ -137,7 +136,7 @@ <h2 id="want-more">Read the <a href='http://thunder-project.github.io/thunder'>d


<footer>
<div class="container">
<div class="row">
<p id="builtby">Built by <a href="https://github.com/thunder-project/thunder/graphs/contributors">contributors</a></p>
</div>
</footer>
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