mod_docstrings9

theislab · Jan 3, 2025 · 83441fe · 83441fe
1 parent 2083a7c
commit 83441fe
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diff --git a/docs/conf.py b/docs/conf.py
@@ -96,6 +96,7 @@
     "anndata": ("https://anndata.readthedocs.io/en/stable/", None),
     "scanpy": ("https://scanpy.readthedocs.io/en/stable/", None),
     "numpy": ("https://numpy.org/doc/stable/", None),
+    'pandas': ('https://pandas.pydata.org/pandas-docs/stable/', None),
 }
 
 # List of patterns, relative to source directory, that match files and

diff --git a/src/troutpy/__init__.py b/src/troutpy/__init__.py
@@ -1,4 +1,6 @@
 from importlib.metadata import version
+from spatialdata._core.spatialdata import SpatialData
+from pandas.core.frame import DataFrame
 
 from . import pl, pp, tl,read
 

diff --git a/src/troutpy/pl/plotting.py b/src/troutpy/pl/plotting.py
@@ -1,5 +1,6 @@
 import numpy as np
 import pandas as pd
+from spatialdata import SpatialData
 import os
 import scanpy as sc
 import seaborn as sns
@@ -10,7 +11,7 @@
 from anndata import AnnData
 from matplotlib.colors import Colormap, Normalize
 from pathlib import Path
-from spatialdata import SpatialData
+
 
 def sorted_heatmap(celltype_by_feature, output_path:str='',filename:str="Heatmap_target_cells_by_gene",format='pdf',cmap='viridis',vmax=None,save=False,figsize=(10, 10)):
     """