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DLBPointon authored Oct 1, 2024
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University of Sassari (Sardinia, Italy)

- Lia Obinu, PhD Student
- [Lia Obinu, PhD Student](https://www.linkedin.com/in/lia-obinu/)

## Description

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If you don't meet the prerequisites or change your mind based on the description or are no longer available at the session time, please email damon at thebgacademy.org to cancel your slot so that someone else on the waitlist might attend.

## Useful links

- [Colora GitHub repo](https://github.com/LiaOb21/colora)
- [Examples of workflows](https://github.com/LiaOb21/colora/wiki/Tutorials)
- [Preprint](https://www.biorxiv.org/content/10.1101/2024.09.10.612003v1)
- [Presentation](https://www.canva.com/design/DAGPH2pFcsI/b1NqMIkotTTSeaTZIklk3Q/view?utm_content=DAGPH2pFcsI&utm_campaign=designshare&utm_medium=link&utm_source=editor)

## Colora tutorial on GitPod :snake:

The GitPod is already set-up to activate a Snakemake envirnment and download all the input files we need to run the tutorial. However, some of them are not placed in the right directory automatically. For the success of the workflow it is essential that all the required inputs are placed in the right place, Snakemake won't recognise them otherwise. This means that the location and names of the directories must be exactly the same as those showed here when you run Colora, unless stated otherwise.
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```
cd /workspace/colora-pipeline/test_data/
mkdir oatkDB
cd oatkDB
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