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1. chewBBACA_schemas chewBBACA_schemas Public

   wgMLST schemas formatted for chewBBACA for food-borne pathogens

   2

2. INNUENDO INNUENDO Public

   Forked from B-UMMI/INNUENDO

   Python 1

3. patho_typing patho_typing Public

   Forked from B-UMMI/patho_typing

   In silico pathogenic typing directly from raw Illumina reads

   Python

4. chewBBACA chewBBACA Public

   Forked from B-UMMI/chewBBACA

   BSR-Based Allele Calling Algorithm

   Python 1

5. getSeqENA getSeqENA Public

   Forked from B-UMMI/getSeqENA

   Get fastq files from ENA using Run IDs

   Python

6. INNUca INNUca Public

   Forked from B-UMMI/INNUca

   INNUENDO quality control of reads, de novo assembly and contigs quality assessment, and possible contamination search

   Python 1