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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,333 @@ | ||
| name: nf_rna | ||
| channels: | ||
| - conda-forge | ||
| - bioconda | ||
| - defaults | ||
| dependencies: | ||
| - _libgcc_mutex=0.1=conda_forge | ||
| - _openmp_mutex=4.5=2_gnu | ||
| - _r-mutex=1.0.1=anacondar_1 | ||
| - alsa-lib=1.2.11=hd590300_1 | ||
| - annotated-types=0.7.0=pyhd8ed1ab_0 | ||
| - binutils_impl_linux-64=2.40=ha1999f0_7 | ||
| - biopet-validatefastq=0.1.1=hdfd78af_3 | ||
| - brotli-python=1.1.0=py311hb755f60_1 | ||
| - bwidget=1.9.14=ha770c72_1 | ||
| - bx-python=0.11.0=py311h312114e_2 | ||
| - bzip2=1.0.8=hd590300_5 | ||
| - c-ares=1.28.1=hd590300_0 | ||
| - ca-certificates=2024.7.4=hbcca054_0 | ||
| - cairo=1.18.0=h3faef2a_0 | ||
| - certifi=2024.7.4=pyhd8ed1ab_0 | ||
| - charset-normalizer=3.3.2=pyhd8ed1ab_0 | ||
| - click=8.1.7=unix_pyh707e725_0 | ||
| - colorama=0.4.6=pyhd8ed1ab_0 | ||
| - coloredlogs=15.0.1=pyhd8ed1ab_3 | ||
| - colormath=3.0.0=py_2 | ||
| - curl=8.8.0=he654da7_0 | ||
| - entrez-direct=22.1=he881be0_0 | ||
| - expat=2.6.2=h59595ed_0 | ||
| - fastp=0.23.4=h125f33a_4 | ||
| - fastqc=0.12.1=hdfd78af_0 | ||
| - font-ttf-dejavu-sans-mono=2.37=hab24e00_0 | ||
| - font-ttf-inconsolata=3.000=h77eed37_0 | ||
| - font-ttf-source-code-pro=2.038=h77eed37_0 | ||
| - font-ttf-ubuntu=0.83=h77eed37_2 | ||
| - fontconfig=2.14.2=h14ed4e7_0 | ||
| - fonts-conda-ecosystem=1=0 | ||
| - fonts-conda-forge=1=0 | ||
| - freetype=2.12.1=h267a509_2 | ||
| - fribidi=1.0.10=h36c2ea0_0 | ||
| - gcc_impl_linux-64=13.2.0=h9eb54c0_13 | ||
| - gettext=0.22.5=h59595ed_2 | ||
| - gettext-tools=0.22.5=h59595ed_2 | ||
| - gfortran_impl_linux-64=13.2.0=h9efe08d_13 | ||
| - giflib=5.2.2=hd590300_0 | ||
| - graphite2=1.3.13=h59595ed_1003 | ||
| - gxx_impl_linux-64=13.2.0=h2a599c4_13 | ||
| - harfbuzz=8.5.0=hfac3d4d_0 | ||
| - htslib=1.20=h5efdd21_1 | ||
| - humanfriendly=10.0=pyhd8ed1ab_6 | ||
| - humanize=4.9.0=pyhd8ed1ab_0 | ||
| - icu=73.2=h59595ed_0 | ||
| - idna=3.7=pyhd8ed1ab_0 | ||
| - importlib-metadata=7.2.1=pyha770c72_0 | ||
| - importlib_metadata=7.2.1=hd8ed1ab_0 | ||
| - isa-l=2.31.0=hd590300_1 | ||
| - jinja2=3.1.4=pyhd8ed1ab_0 | ||
| - kaleido-core=0.2.1=h3644ca4_0 | ||
| - kernel-headers_linux-64=2.6.32=he073ed8_17 | ||
| - keyutils=1.6.1=h166bdaf_0 | ||
| - krb5=1.21.2=h659d440_0 | ||
| - lcms2=2.16=hb7c19ff_0 | ||
| - ld_impl_linux-64=2.40=hf3520f5_7 | ||
| - lerc=4.0.0=h27087fc_0 | ||
| - libasprintf=0.22.5=h661eb56_2 | ||
| - libasprintf-devel=0.22.5=h661eb56_2 | ||
| - libblas=3.9.0=22_linux64_openblas | ||
| - libcblas=3.9.0=22_linux64_openblas | ||
| - libcups=2.3.3=h4637d8d_4 | ||
| - libcurl=8.8.0=hca28451_0 | ||
| - libdeflate=1.20=hd590300_0 | ||
| - libedit=3.1.20191231=he28a2e2_2 | ||
| - libev=4.33=hd590300_2 | ||
| - libexpat=2.6.2=h59595ed_0 | ||
| - libffi=3.4.2=h7f98852_5 | ||
| - libgcc-devel_linux-64=13.2.0=hdb50d1a_113 | ||
| - libgcc-ng=13.2.0=h77fa898_12 | ||
| - libgettextpo=0.22.5=h59595ed_2 | ||
| - libgettextpo-devel=0.22.5=h59595ed_2 | ||
| - libgfortran-ng=13.2.0=h69a702a_13 | ||
| - libgfortran5=13.2.0=h3d2ce59_13 | ||
| - libglib=2.80.2=hf974151_0 | ||
| - libgomp=13.2.0=h77fa898_12 | ||
| - libiconv=1.17=hd590300_2 | ||
| - libidn2=2.3.7=hd590300_0 | ||
| - libjpeg-turbo=3.0.0=hd590300_1 | ||
| - liblapack=3.9.0=22_linux64_openblas | ||
| - libnghttp2=1.58.0=h47da74e_1 | ||
| - libnsl=2.0.1=hd590300_0 | ||
| - libopenblas=0.3.27=pthreads_h413a1c8_0 | ||
| - libpng=1.6.43=h2797004_0 | ||
| - libsanitizer=13.2.0=h6ddb7a1_13 | ||
| - libsqlite=3.46.0=hde9e2c9_0 | ||
| - libssh2=1.11.0=h0841786_0 | ||
| - libstdcxx-devel_linux-64=13.2.0=hdb50d1a_113 | ||
| - libstdcxx-ng=13.2.0=hc0a3c3a_12 | ||
| - libtiff=4.6.0=h1dd3fc0_3 | ||
| - libunistring=0.9.10=h7f98852_0 | ||
| - libuuid=2.38.1=h0b41bf4_0 | ||
| - libwebp-base=1.4.0=hd590300_0 | ||
| - libxcb=1.15=h0b41bf4_0 | ||
| - libxcrypt=4.4.36=hd590300_1 | ||
| - libzlib=1.2.13=h4ab18f5_6 | ||
| - make=4.3=hd18ef5c_1 | ||
| - markdown=3.6=pyhd8ed1ab_0 | ||
| - markdown-it-py=3.0.0=pyhd8ed1ab_0 | ||
| - markupsafe=2.1.5=py311h459d7ec_0 | ||
| - mathjax=2.7.7=ha770c72_3 | ||
| - mdurl=0.1.2=pyhd8ed1ab_0 | ||
| - multiqc=1.22.3=pyhdfd78af_0 | ||
| - ncurses=6.5=h59595ed_0 | ||
| - networkx=3.3=pyhd8ed1ab_1 | ||
| - nspr=4.35=h27087fc_0 | ||
| - nss=3.100=hca3bf56_0 | ||
| - numpy=1.26.4=py311h64a7726_0 | ||
| - openjdk=8.0.412=hd590300_1 | ||
| - openjpeg=2.5.2=h488ebb8_0 | ||
| - openssl=3.3.1=h4bc722e_2 | ||
| - packaging=24.1=pyhd8ed1ab_0 | ||
| - pandas=2.2.2=py311h14de704_1 | ||
| - pango=1.54.0=h84a9a3c_0 | ||
| - pcre2=10.43=hcad00b1_0 | ||
| - perl=5.32.1=7_hd590300_perl5 | ||
| - pillow=10.3.0=py311h18e6fac_0 | ||
| - pip=24.0=pyhd8ed1ab_0 | ||
| - pixman=0.43.2=h59595ed_0 | ||
| - plotly=5.22.0=pyhd8ed1ab_0 | ||
| - pthread-stubs=0.4=h36c2ea0_1001 | ||
| - pyaml-env=1.1.0=pyhd8ed1ab_0 | ||
| - pybigwig=0.3.22=py311hc40ab17_3 | ||
| - pydantic=2.7.4=pyhd8ed1ab_0 | ||
| - pydantic-core=2.18.4=py311h5ecf98a_0 | ||
| - pygments=2.18.0=pyhd8ed1ab_0 | ||
| - pysam=0.22.1=py311h1f0e11c_1 | ||
| - pysocks=1.7.1=pyha2e5f31_6 | ||
| - python=3.11.9=hb806964_0_cpython | ||
| - python-dateutil=2.9.0=pyhd8ed1ab_0 | ||
| - python-kaleido=0.2.1=pyhd8ed1ab_0 | ||
| - python-tzdata=2024.1=pyhd8ed1ab_0 | ||
| - python_abi=3.11=4_cp311 | ||
| - pytz=2024.1=pyhd8ed1ab_0 | ||
| - pyyaml=5.4.1=py311hd4cff14_4 | ||
| - r-base=4.4.0=h019f4a6_1 | ||
| - readline=8.2=h8228510_1 | ||
| - requests=2.32.3=pyhd8ed1ab_0 | ||
| - rich=13.7.1=pyhd8ed1ab_0 | ||
| - rich-click=1.8.3=pyhd8ed1ab_0 | ||
| - rseqc=5.0.3=py311hdad781d_2 | ||
| - samtools=1.20=h50ea8bc_0 | ||
| - sed=4.8=he412f7d_0 | ||
| - setuptools=70.1.1=pyhd8ed1ab_0 | ||
| - six=1.16.0=pyh6c4a22f_0 | ||
| - spectra=0.0.11=py_1 | ||
| - sqlite=3.46.0=h6d4b2fc_0 | ||
| - sra-tools=2.9.6=hf484d3e_0 | ||
| - star=2.7.11b=h43eeafb_1 | ||
| - subread=2.0.6=he4a0461_2 | ||
| - sysroot_linux-64=2.12=he073ed8_17 | ||
| - tenacity=8.4.2=pyhd8ed1ab_0 | ||
| - tk=8.6.13=noxft_h4845f30_101 | ||
| - tktable=2.10=h8bc8fbc_6 | ||
| - tqdm=4.66.4=pyhd8ed1ab_0 | ||
| - typeguard=4.3.0=pyhd8ed1ab_0 | ||
| - typing-extensions=4.12.2=hd8ed1ab_0 | ||
| - typing_extensions=4.12.2=pyha770c72_0 | ||
| - tzdata=2024a=h0c530f3_0 | ||
| - urllib3=2.2.2=pyhd8ed1ab_0 | ||
| - wget=1.21.4=hda4d442_0 | ||
| - wheel=0.43.0=pyhd8ed1ab_1 | ||
| - xorg-fixesproto=5.0=h7f98852_1002 | ||
| - xorg-inputproto=2.3.2=h7f98852_1002 | ||
| - xorg-kbproto=1.0.7=h7f98852_1002 | ||
| - xorg-libice=1.1.1=hd590300_0 | ||
| - xorg-libsm=1.2.4=h7391055_0 | ||
| - xorg-libx11=1.8.9=h8ee46fc_0 | ||
| - xorg-libxau=1.0.11=hd590300_0 | ||
| - xorg-libxdmcp=1.1.3=h7f98852_0 | ||
| - xorg-libxext=1.3.4=h0b41bf4_2 | ||
| - xorg-libxfixes=5.0.3=h7f98852_1004 | ||
| - xorg-libxi=1.7.10=h7f98852_0 | ||
| - xorg-libxrender=0.9.11=hd590300_0 | ||
| - xorg-libxt=1.3.0=hd590300_1 | ||
| - xorg-libxtst=1.2.3=h7f98852_1002 | ||
| - xorg-recordproto=1.14.2=h7f98852_1002 | ||
| - xorg-renderproto=0.11.1=h7f98852_1002 | ||
| - xorg-xextproto=7.3.0=h0b41bf4_1003 | ||
| - xorg-xproto=7.0.31=h7f98852_1007 | ||
| - xz=5.2.6=h166bdaf_0 | ||
| - yaml=0.2.5=h7f98852_2 | ||
| - zipp=3.19.2=pyhd8ed1ab_0 | ||
| - zlib=1.2.13=h4ab18f5_6 | ||
| - zstd=1.5.6=ha6fb4c9_0 | ||
| - pip: | ||
| - accessible-pygments==0.0.5 | ||
| - alabaster==1.0.0 | ||
| - anyio==4.4.0 | ||
| - appdirs==1.4.4 | ||
| - argon2-cffi==23.1.0 | ||
| - argon2-cffi-bindings==21.2.0 | ||
| - arrow==1.3.0 | ||
| - asttokens==2.4.1 | ||
| - async-lru==2.0.4 | ||
| - attrs==23.2.0 | ||
| - babel==2.16.0 | ||
| - backports-tarfile==1.2.0 | ||
| - beautifulsoup4==4.12.3 | ||
| - bleach==6.1.0 | ||
| - cattrs==23.2.3 | ||
| - cffi==1.17.0 | ||
| - cfgv==3.4.0 | ||
| - comm==0.2.2 | ||
| - coverage==7.6.1 | ||
| - cryptography==43.0.0 | ||
| - debugpy==1.8.5 | ||
| - decorator==5.1.1 | ||
| - defusedxml==0.7.1 | ||
| - distlib==0.3.8 | ||
| - docutils==0.21.2 | ||
| - executing==2.0.1 | ||
| - fastjsonschema==2.20.0 | ||
| - filelock==3.15.4 | ||
| - fqdn==1.5.1 | ||
| - greenlet==3.0.3 | ||
| - h11==0.14.0 | ||
| - httpcore==1.0.5 | ||
| - httpx==0.27.0 | ||
| - identify==2.6.0 | ||
| - imagesize==1.4.1 | ||
| - iniconfig==2.0.0 | ||
| - ipykernel==6.29.5 | ||
| - ipython==8.26.0 | ||
| - isoduration==20.11.0 | ||
| - jaraco-classes==3.4.0 | ||
| - jaraco-context==5.3.0 | ||
| - jaraco-functools==4.0.2 | ||
| - jedi==0.19.1 | ||
| - jeepney==0.8.0 | ||
| - json5==0.9.25 | ||
| - jsonpointer==3.0.0 | ||
| - jsonschema==4.23.0 | ||
| - jsonschema-specifications==2023.12.1 | ||
| - jupyter-cache==1.0.0 | ||
| - jupyter-client==8.6.2 | ||
| - jupyter-core==5.7.2 | ||
| - jupyter-events==0.10.0 | ||
| - jupyter-lsp==2.2.5 | ||
| - jupyter-server==2.14.2 | ||
| - jupyter-server-terminals==0.5.3 | ||
| - jupyterlab==4.2.4 | ||
| - jupyterlab-pygments==0.3.0 | ||
| - jupyterlab-server==2.27.3 | ||
| - keyring==25.3.0 | ||
| - latexcodec==3.0.0 | ||
| - matplotlib-inline==0.1.7 | ||
| - mdit-py-plugins==0.4.1 | ||
| - mistune==3.0.2 | ||
| - more-itertools==10.4.0 | ||
| - myst-nb==1.1.1 | ||
| - myst-parser==4.0.0 | ||
| - nbclient==0.10.0 | ||
| - nbconvert==7.16.4 | ||
| - nbformat==5.10.4 | ||
| - nest-asyncio==1.6.0 | ||
| - nextflow==24.4.3 | ||
| - nf-rnaseq==0.0.1 | ||
| - nh3==0.2.18 | ||
| - nodeenv==1.9.1 | ||
| - notebook==7.2.1 | ||
| - notebook-shim==0.2.4 | ||
| - overrides==7.7.0 | ||
| - pandocfilters==1.5.1 | ||
| - parso==0.8.4 | ||
| - pexpect==4.9.0 | ||
| - pkginfo==1.10.0 | ||
| - platformdirs==4.2.2 | ||
| - pluggy==1.5.0 | ||
| - pre-commit==3.8.0 | ||
| - prometheus-client==0.20.0 | ||
| - prompt-toolkit==3.0.47 | ||
| - psutil==6.0.0 | ||
| - ptyprocess==0.7.0 | ||
| - pure-eval==0.2.3 | ||
| - pybtex==0.24.0 | ||
| - pybtex-docutils==1.0.3 | ||
| - pycparser==2.22 | ||
| - pydata-sphinx-theme==0.15.4 | ||
| - pytest==8.3.2 | ||
| - python-json-logger==2.0.7 | ||
| - pyzmq==26.1.0 | ||
| - readme-renderer==44.0 | ||
| - referencing==0.35.1 | ||
| - requests-cache==0.9.8 | ||
| - requests-toolbelt==1.0.0 | ||
| - rfc3339-validator==0.1.4 | ||
| - rfc3986==2.0.0 | ||
| - rfc3986-validator==0.1.1 | ||
| - rpds-py==0.20.0 | ||
| - secretstorage==3.3.3 | ||
| - send2trash==1.8.3 | ||
| - session-info==1.0.0 | ||
| - sniffio==1.3.1 | ||
| - snowballstemmer==2.2.0 | ||
| - soupsieve==2.5 | ||
| - sphinx==8.0.2 | ||
| - sphinx-autodoc-typehints==2.2.3 | ||
| - sphinx-book-theme==1.1.3 | ||
| - sphinx-copybutton==0.5.2 | ||
| - sphinxcontrib-applehelp==2.0.0 | ||
| - sphinxcontrib-bibtex==2.6.2 | ||
| - sphinxcontrib-devhelp==2.0.0 | ||
| - sphinxcontrib-htmlhelp==2.1.0 | ||
| - sphinxcontrib-jsmath==1.0.1 | ||
| - sphinxcontrib-qthelp==2.0.0 | ||
| - sphinxcontrib-serializinghtml==2.0.0 | ||
| - sphinxext-opengraph==0.9.1 | ||
| - sqlalchemy==2.0.32 | ||
| - stack-data==0.6.3 | ||
| - stdlib-list==0.10.0 | ||
| - tabulate==0.9.0 | ||
| - terminado==0.18.1 | ||
| - tinycss2==1.3.0 | ||
| - tornado==6.4.1 | ||
| - traitlets==5.14.3 | ||
| - twine==5.1.1 | ||
| - types-python-dateutil==2.9.0.20240316 | ||
| - uri-template==1.3.0 | ||
| - url-normalize==1.4.3 | ||
| - virtualenv==20.26.3 | ||
| - wcwidth==0.2.13 | ||
| - webcolors==24.8.0 | ||
| - webencodings==0.5.1 | ||
| - websocket-client==1.8.0 | ||
| prefix: /home/whitej6/miniforge3/envs/nf_rna |