changed params.bam directory error (aligned > alignment)

tansey-lab · Jul 19, 2024 · 4fe2b57 · 4fe2b57
1 parent 8b60491
commit 4fe2b57
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/nextflow/main.nf b/nextflow/main.nf
@@ -20,7 +20,7 @@ params.fastp_json = "${params.outDir}/fastp/*fastp.json"
 params.fastqc_fastq = "${params.outDir}/fastqc/fastq/*/*"
 params.fastqc_fastp = "${params.outDir}/fastqc/fastp/*/*"
 
-params.bam = "${params.outDir}/aligned/*.Aligned.sortedByCoord.out.bam"
+params.bam = "${params.outDir}/alignment/*.Aligned.sortedByCoord.out.bam"
 
 log.info """\
         STAR RNA-Seq NextFlow Pipeline (Reference-Based)