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Bump Container Version #159

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merged 1 commit into from
Mar 20, 2024
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Merged

Bump Container Version #159

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4 changes: 2 additions & 2 deletions nextflow/modules/bayestme/bayestme_bleeding_correction/main.nf
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Original file line number Diff line number Diff line change
Expand Up @@ -3,8 +3,8 @@ process BAYESTME_BLEEDING_CORRECTION {
label 'process_high_memory'
label 'process_long'
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'docker://jeffquinnmsk/bayestme:5e9a3ca9b60378207c76a8e378df164b99abd928' :
'docker.io/jeffquinnmsk/bayestme:5e9a3ca9b60378207c76a8e378df164b99abd928' }"
'docker://jeffquinnmsk/bayestme:172a8bfa3ea29f170313e2622cb6afd595beaf51' :
'docker.io/jeffquinnmsk/bayestme:172a8bfa3ea29f170313e2622cb6afd595beaf51' }"

input:
tuple val(meta), path(adata)
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4 changes: 2 additions & 2 deletions nextflow/modules/bayestme/bayestme_deconvolution/main.nf
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Original file line number Diff line number Diff line change
Expand Up @@ -3,8 +3,8 @@ process BAYESTME_DECONVOLUTION {
label 'process_high_memory'
label 'process_long'
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'docker://jeffquinnmsk/bayestme:5e9a3ca9b60378207c76a8e378df164b99abd928' :
'docker.io/jeffquinnmsk/bayestme:5e9a3ca9b60378207c76a8e378df164b99abd928' }"
'docker://jeffquinnmsk/bayestme:172a8bfa3ea29f170313e2622cb6afd595beaf51' :
'docker.io/jeffquinnmsk/bayestme:172a8bfa3ea29f170313e2622cb6afd595beaf51' }"

input:
tuple val(meta), path(adata), val(n_cell_types), val(spatial_smoothing_parameter), path(expression_truth)
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4 changes: 2 additions & 2 deletions nextflow/modules/bayestme/bayestme_filter_genes/main.nf
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Original file line number Diff line number Diff line change
Expand Up @@ -2,8 +2,8 @@ process BAYESTME_FILTER_GENES {
tag "$meta.id"
label 'process_single'
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'docker://jeffquinnmsk/bayestme:5e9a3ca9b60378207c76a8e378df164b99abd928' :
'docker.io/jeffquinnmsk/bayestme:5e9a3ca9b60378207c76a8e378df164b99abd928' }"
'docker://jeffquinnmsk/bayestme:172a8bfa3ea29f170313e2622cb6afd595beaf51' :
'docker.io/jeffquinnmsk/bayestme:172a8bfa3ea29f170313e2622cb6afd595beaf51' }"

input:
tuple val(meta), path(adata), val(filter_ribosomal_genes), val(n_top_by_standard_deviation), val(spot_threshold), path(expression_truth)
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4 changes: 2 additions & 2 deletions nextflow/modules/bayestme/bayestme_load_spaceranger/main.nf
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Original file line number Diff line number Diff line change
Expand Up @@ -2,8 +2,8 @@ process BAYESTME_LOAD_SPACERANGER {
tag "$meta.id"
label 'process_single'
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'docker://jeffquinnmsk/bayestme:5e9a3ca9b60378207c76a8e378df164b99abd928' :
'docker.io/jeffquinnmsk/bayestme:5e9a3ca9b60378207c76a8e378df164b99abd928' }"
'docker://jeffquinnmsk/bayestme:172a8bfa3ea29f170313e2622cb6afd595beaf51' :
'docker.io/jeffquinnmsk/bayestme:172a8bfa3ea29f170313e2622cb6afd595beaf51' }"

input:
tuple val(meta), path(spaceranger_dir)
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4 changes: 2 additions & 2 deletions nextflow/modules/bayestme/bayestme_phenotype_selection/main.nf
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Original file line number Diff line number Diff line change
Expand Up @@ -20,8 +20,8 @@ process BAYESTME_PHENOTYPE_SELECTION {
label 'process_high_memory'
label 'process_long'
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'docker://jeffquinnmsk/bayestme:5e9a3ca9b60378207c76a8e378df164b99abd928' :
'docker.io/jeffquinnmsk/bayestme:5e9a3ca9b60378207c76a8e378df164b99abd928' }"
'docker://jeffquinnmsk/bayestme:172a8bfa3ea29f170313e2622cb6afd595beaf51' :
'docker.io/jeffquinnmsk/bayestme:172a8bfa3ea29f170313e2622cb6afd595beaf51' }"

input:
tuple val(meta), path(adata), val(job_index), val(min_n_cell_types), val(max_n_cell_types), val(min_lambda), val(max_lambda), val(n_folds)
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4 changes: 2 additions & 2 deletions nextflow/modules/bayestme/bayestme_read_phenotype_selection_results/main.nf
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Original file line number Diff line number Diff line change
Expand Up @@ -2,8 +2,8 @@ process BAYESTME_READ_PHENOTYPE_SELECTION_RESULTS {
tag "$meta.id"
label "process_single"
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'docker://jeffquinnmsk/bayestme:5e9a3ca9b60378207c76a8e378df164b99abd928' :
'docker.io/jeffquinnmsk/bayestme:5e9a3ca9b60378207c76a8e378df164b99abd928' }"
'docker://jeffquinnmsk/bayestme:172a8bfa3ea29f170313e2622cb6afd595beaf51' :
'docker.io/jeffquinnmsk/bayestme:172a8bfa3ea29f170313e2622cb6afd595beaf51' }"

input:
tuple val(meta), file(fold_results)
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4 changes: 2 additions & 2 deletions nextflow/modules/bayestme/bayestme_spatial_expression/main.nf
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Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -3,8 +3,8 @@ process BAYESTME_SPATIAL_EXPRESSION {
label 'process_high_memory'
label 'process_long'
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'docker://jeffquinnmsk/bayestme:5e9a3ca9b60378207c76a8e378df164b99abd928' :
'docker.io/jeffquinnmsk/bayestme:5e9a3ca9b60378207c76a8e378df164b99abd928' }"
'docker://jeffquinnmsk/bayestme:172a8bfa3ea29f170313e2622cb6afd595beaf51' :
'docker.io/jeffquinnmsk/bayestme:172a8bfa3ea29f170313e2622cb6afd595beaf51' }"

input:
tuple val(meta), path(adata), path(deconvolution_samples)
Expand Down
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