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Default to No Selection Criteria for Marker Genes #130

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merged 1 commit into from
Oct 23, 2023

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jeffquinn-msk
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Our current methods for selecting marker genes impose some constraints on what can be considered a true marker gene for a cell type. This produces a very confusing user experience when for instance, for the 12th out of 12 cell types, there are no valid marker genes. This causes the pipeline to crash. It might be a more sensible default to just pick the best available N genes and use those for the plots, and users can use the more strict criteria later on if they wish.

@jeffquinn-msk jeffquinn-msk merged commit 4a4fa7e into main Oct 23, 2023
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@jeffquinn-msk jeffquinn-msk deleted the jq_relax_marker_genes branch October 23, 2023 15:08
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