Use Spatial Guide by Default (#173)

Co-authored-by: Quinn <[email protected]>
tansey-lab · Apr 19, 2024 · 93be530 · 93be530
1 parent 74fe064
commit 93be530
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diff --git a/src/bayestme/cli/common.py b/src/bayestme/cli/common.py
@@ -42,8 +42,8 @@ def add_deconvolution_arguments(parser: argparse.ArgumentParser):
     parser.add_argument(
         "--use-spatial-guide",
         help="Use spatial guide (variational family with spatial priors) for SVI",
-        action="store_true",
-        default=False,
+        action=argparse.BooleanOptionalAction,
+        default=True,
     )
 
     return parser
diff --git a/src/bayestme/cli/deconvolve_test.py b/src/bayestme/cli/deconvolve_test.py
@@ -40,6 +40,7 @@ def test_deconvolve():
         "100",
         "--n-components",
         "5",
+        "--no-use-spatial-guide",
     ]
 
     try:
-Original file line number
+Diff line change
@@ Expand Up / @@ -40,6 +40,7 @@ def test_deconvolve(): @@
             "100",
             "--n-components",
             "5",
+            "--no-use-spatial-guide",
         ]
         try:
@@ Expand Down @@