Bump Container (#161) #137

	name: Container Builds
	on:
	push:
	branches:
	- 'main'
	jobs:
	build-docker:
	runs-on: ubuntu-latest
	steps:
	- name: Set up QEMU
	uses: docker/setup-qemu-action@v2
	- name: Set up Docker Buildx
	uses: docker/setup-buildx-action@v2
	- name: Login to DockerHub
	uses: docker/login-action@v2
	with:
	username: ${{ secrets.DOCKERHUB_USERNAME }}
	password: ${{ secrets.DOCKERHUB_TOKEN }}
	- name: Build and push BayesTME container
	uses: docker/build-push-action@v3
	with:
	push: true
	tags: \|
	jeffquinnmsk/bayestme:latest
	jeffquinnmsk/bayestme:${{ github.sha }}
	cache-from: type=registry,ref=jeffquinnmsk/bayestme:latest
	cache-to: type=inline
	nextflow-integration:
	runs-on: ubuntu-20.04
	name: pytest
	needs: build-docker

	env:
	NXF_ANSI_LOG: false

	steps:
	- uses: actions/checkout@v3

	- name: Set up Python
	uses: actions/setup-python@v4
	with:
	python-version: "3.x"

	- uses: actions/cache@v3
	with:
	path: ~/.cache/pip
	key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements.txt') }}
	restore-keys: \|
	${{ runner.os }}-pip-

	- name: Install Python dependencies
	run: python -m pip install --upgrade pip pytest-workflow cryptography

	- name: Setup Nextflow
	uses: nf-core/setup-nextflow@v1

	- name: Run pytest-workflow
	working-directory: ./nextflow
	run: TMPDIR=~ PROFILE=${{ matrix.profile }} pytest --symlink --kwdof --git-aware --color=yes

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