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Add console app tutorial
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Bujee415 authored Dec 3, 2024
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Expand Up @@ -77,6 +77,16 @@ Molecular spectrum networking is a tool for creating networks that visualize the

To follow this video, please download the dataset and check the description in [https://zenodo.org/communities/msdial?q=&l=list&p=1&s=10&sort=newest](https://zenodo.org/communities/msdial?q=&l=list&p=1&s=10&sort=newest).

## 7. Console app

1. Download console app from [MS-DIAL releases](https://github.com/systemsomicslab/MsdialWorkbench/releases).
2. Open your terminal or PowerShell.
3. You can get help by typing "YourPathOfMSDIALCUI\MSDIALCUI.exe".
![fig1-1](images/MSDIALCUI/Console_help.png)
4. Type "YourPath\MSDIALCUI.exe YourAnalysisType -i YourInputFolder\ -o YourOutputFolder\ -m YourLibraryFolder\YourLibraryFile -p". For example, "YourPath\MSDIALCUI.exe lcms -i .\rawdata\ -o .\rawdata\ -m YourLibraryFolder\msdial_console_param4lipidomics.txt -p"
5. It will take around a minute to start processing your data.
![fig1-2](images/MSDIALCUI/Console_example.png)

### The Workflow
1. Download the dataset of "Molecular spectrum networking tutorial dataset" in [https://zenodo.org/communities/msdial?q=&l=list&p=1&s=10&sort=newest](https://zenodo.org/communities/msdial?q=&l=list&p=1&s=10&sort=newest)
2. Open *.mdproject in MS-DIAL5
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