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@rawagiha
rawagiha committed Dec 27, 2024
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31 changes: 17 additions & 14 deletions 404.html
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<!DOCTYPE html>
<html lang="en">
<html lang="en" data-bs-theme="light">
<head>
<meta charset="utf-8">
<meta http-equiv="X-UA-Compatible" content="IE=edge">
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<link rel="shortcut icon" href="/img/favicon.ico">
<title>RNAIndel - St. Jude</title>
<link href="/css/bootstrap.min.css" rel="stylesheet">
<link href="/css/font-awesome.min.css" rel="stylesheet">
<link href="/css/fontawesome.min.css" rel="stylesheet">
<link href="/css/brands.min.css" rel="stylesheet">
<link href="/css/solid.min.css" rel="stylesheet">
<link href="/css/v4-font-face.min.css" rel="stylesheet">
<link href="/css/base.css" rel="stylesheet">
<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/highlight.js/11.8.0/styles/purebasic.min.css">
<link id="hljs-light" rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/highlight.js/11.8.0/styles/purebasic.min.css" >
<link id="hljs-dark" rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/highlight.js/11.8.0/styles/github-dark.min.css" disabled>
<script src="https://cdnjs.cloudflare.com/ajax/libs/highlight.js/11.8.0/highlight.min.js"></script>
<script>hljs.highlightAll();</script>
</head>
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<div class="container">
<a class="navbar-brand" href="/.">RNAIndel - St. Jude</a>
<!-- Expander button -->
<button type="button" class="navbar-toggler" data-toggle="collapse" data-target="#navbar-collapse">
<button type="button" class="navbar-toggler" data-bs-toggle="collapse" data-bs-target="#navbar-collapse" aria-controls="navbar-collapse" aria-expanded="false" aria-label="Toggle navigation">
<span class="navbar-toggler-icon"></span>
</button>

<!-- Expanded navigation -->
<div id="navbar-collapse" class="navbar-collapse collapse">
<!-- Main navigation -->
<ul class="nav navbar-nav">
<li class="navitem">
<li class="nav-item">
<a href="/." class="nav-link">Home</a>
</li>
<li class="navitem">
<li class="nav-item">
<a href="/filtering/" class="nav-link">Filtering</a>
</li>
<li class="navitem">
<li class="nav-item">
<a href="/training/" class="nav-link">Training</a>
</li>
</ul>

<ul class="nav navbar-nav ml-auto">
<ul class="nav navbar-nav ms-md-auto">
<li class="nav-item">
<a href="#" class="nav-link" data-toggle="modal" data-target="#mkdocs_search_modal">
<a href="#" class="nav-link" data-bs-toggle="modal" data-bs-target="#mkdocs_search_modal">
<i class="fa fa-search"></i> Search
</a>
</li>
<li class="nav-item">
<a href="https://github.com/stjude/RNAIndel" class="nav-link"><i class="fa fa-github"></i> GitHub</a>
<a href="https://github.com/stjude/RNAIndel" class="nav-link"><i class="fa-brands fa-github"></i> GitHub</a>
</li>
</ul>
</div>
Expand All @@ -74,8 +78,7 @@ <h1 id="404-page-not-found" style="text-align: center">404</h1>
<p>© 2020 St. Jude Children's Research Hospital</p>
<p>Documentation built with <a href="https://www.mkdocs.org/">MkDocs</a>.</p>
</footer>
<script src="/js/jquery-3.6.0.min.js"></script>
<script src="/js/bootstrap.min.js"></script>
<script src="/js/bootstrap.bundle.min.js"></script>
<script>
var base_url = "/",
shortcuts = {"help": 191, "next": 78, "previous": 80, "search": 83};
Expand All @@ -88,7 +91,7 @@ <h1 id="404-page-not-found" style="text-align: center">404</h1>
<div class="modal-content">
<div class="modal-header">
<h4 class="modal-title" id="searchModalLabel">Search</h4>
<button type="button" class="close" data-dismiss="modal"><span aria-hidden="true">&times;</span><span class="sr-only">Close</span></button>
<button type="button" class="btn-close" data-bs-dismiss="modal" aria-label="Close"></button>
</div>
<div class="modal-body">
<p>From here you can search these documents. Enter your search terms below.</p>
Expand All @@ -108,7 +111,7 @@ <h4 class="modal-title" id="searchModalLabel">Search</h4>
<div class="modal-content">
<div class="modal-header">
<h4 class="modal-title" id="keyboardModalLabel">Keyboard Shortcuts</h4>
<button type="button" class="close" data-dismiss="modal"><span aria-hidden="true">&times;</span><span class="sr-only">Close</span></button>
<button type="button" class="btn-close" data-bs-dismiss="modal" aria-label="Close"></button>
</div>
<div class="modal-body">
<table class="table">
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1 change: 1 addition & 0 deletions css/bootstrap.min.css.map
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6 changes: 6 additions & 0 deletions css/brands.min.css
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4 changes: 0 additions & 4 deletions css/font-awesome.min.css
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9 changes: 9 additions & 0 deletions css/fontawesome.min.css
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6 changes: 6 additions & 0 deletions css/solid.min.css
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/*!
* Font Awesome Free 6.5.1 by @fontawesome - https://fontawesome.com
* License - https://fontawesome.com/license/free (Icons: CC BY 4.0, Fonts: SIL OFL 1.1, Code: MIT License)
* Copyright 2023 Fonticons, Inc.
*/
:host,:root{--fa-style-family-classic:"Font Awesome 6 Free";--fa-font-solid:normal 900 1em/1 "Font Awesome 6 Free"}@font-face{font-family:"Font Awesome 6 Free";font-style:normal;font-weight:900;font-display:block;src:url(../webfonts/fa-solid-900.woff2) format("woff2"),url(../webfonts/fa-solid-900.ttf) format("truetype")}.fa-solid,.fas{font-weight:900}
6 changes: 6 additions & 0 deletions css/v4-font-face.min.css
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41 changes: 22 additions & 19 deletions filtering/index.html
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<!DOCTYPE html>
<html lang="en">
<html lang="en" data-bs-theme="light">
<head>
<meta charset="utf-8">
<meta http-equiv="X-UA-Compatible" content="IE=edge">
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<link rel="shortcut icon" href="../img/favicon.ico">
<title>Filtering - RNAIndel - St. Jude</title>
<link href="../css/bootstrap.min.css" rel="stylesheet">
<link href="../css/font-awesome.min.css" rel="stylesheet">
<link href="../css/fontawesome.min.css" rel="stylesheet">
<link href="../css/brands.min.css" rel="stylesheet">
<link href="../css/solid.min.css" rel="stylesheet">
<link href="../css/v4-font-face.min.css" rel="stylesheet">
<link href="../css/base.css" rel="stylesheet">
<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/highlight.js/11.8.0/styles/purebasic.min.css">
<link id="hljs-light" rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/highlight.js/11.8.0/styles/purebasic.min.css" >
<link id="hljs-dark" rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/highlight.js/11.8.0/styles/github-dark.min.css" disabled>
<script src="https://cdnjs.cloudflare.com/ajax/libs/highlight.js/11.8.0/highlight.min.js"></script>
<script>hljs.highlightAll();</script>
</head>
Expand All @@ -22,28 +26,28 @@
<div class="container">
<a class="navbar-brand" href="..">RNAIndel - St. Jude</a>
<!-- Expander button -->
<button type="button" class="navbar-toggler" data-toggle="collapse" data-target="#navbar-collapse">
<button type="button" class="navbar-toggler" data-bs-toggle="collapse" data-bs-target="#navbar-collapse" aria-controls="navbar-collapse" aria-expanded="false" aria-label="Toggle navigation">
<span class="navbar-toggler-icon"></span>
</button>

<!-- Expanded navigation -->
<div id="navbar-collapse" class="navbar-collapse collapse">
<!-- Main navigation -->
<ul class="nav navbar-nav">
<li class="navitem">
<li class="nav-item">
<a href=".." class="nav-link">Home</a>
</li>
<li class="navitem active">
<a href="./" class="nav-link">Filtering</a>
<li class="nav-item">
<a href="./" class="nav-link active" aria-current="page">Filtering</a>
</li>
<li class="navitem">
<li class="nav-item">
<a href="../training/" class="nav-link">Training</a>
</li>
</ul>

<ul class="nav navbar-nav ml-auto">
<ul class="nav navbar-nav ms-md-auto">
<li class="nav-item">
<a href="#" class="nav-link" data-toggle="modal" data-target="#mkdocs_search_modal">
<a href="#" class="nav-link" data-bs-toggle="modal" data-bs-target="#mkdocs_search_modal">
<i class="fa fa-search"></i> Search
</a>
</li>
Expand All @@ -58,7 +62,7 @@
</a>
</li>
<li class="nav-item">
<a href="https://github.com/stjude/RNAIndel/edit/master/docs/filtering/README.md" class="nav-link"><i class="fa fa-github"></i> Edit on GitHub</a>
<a href="https://github.com/stjude/RNAIndel/edit/master/docs/filtering/README.md" class="nav-link"><i class="fa-brands fa-github"></i> Edit on GitHub</a>
</li>
</ul>
</div>
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<div class="container">
<div class="row">
<div class="col-md-3"><div class="navbar-light navbar-expand-md bs-sidebar hidden-print affix" role="complementary">
<div class="col-md-3"><div class="navbar-expand-md bs-sidebar hidden-print affix" role="complementary">
<div class="navbar-header">
<button type="button" class="navbar-toggler collapsed" data-toggle="collapse" data-target="#toc-collapse" title="Table of Contents">
<button type="button" class="navbar-toggler collapsed" data-bs-toggle="collapse" data-bs-target="#toc-collapse" title="Table of Contents">
<span class="fa fa-angle-down"></span>
</button>
</div>


<div id="toc-collapse" class="navbar-collapse collapse card bg-secondary">
<div id="toc-collapse" class="navbar-collapse collapse card bg-body-tertiary">
<ul class="nav flex-column">

<li class="nav-item" data-level="2"><a href="#recurrent-somatic-indels" class="nav-link">Recurrent somatic indels</a>
<li class="nav-item" data-bs-level="2"><a href="#recurrent-somatic-indels" class="nav-link">Recurrent somatic indels</a>
<ul class="nav flex-column">
</ul>
</li>
Expand Down Expand Up @@ -108,8 +112,7 @@ <h4 id="options">Options</h4>
<p>© 2020 St. Jude Children's Research Hospital</p>
<p>Documentation built with <a href="https://www.mkdocs.org/">MkDocs</a>.</p>
</footer>
<script src="../js/jquery-3.6.0.min.js"></script>
<script src="../js/bootstrap.min.js"></script>
<script src="../js/bootstrap.bundle.min.js"></script>
<script>
var base_url = "..",
shortcuts = {"help": 191, "next": 78, "previous": 80, "search": 83};
Expand All @@ -122,7 +125,7 @@ <h4 id="options">Options</h4>
<div class="modal-content">
<div class="modal-header">
<h4 class="modal-title" id="searchModalLabel">Search</h4>
<button type="button" class="close" data-dismiss="modal"><span aria-hidden="true">&times;</span><span class="sr-only">Close</span></button>
<button type="button" class="btn-close" data-bs-dismiss="modal" aria-label="Close"></button>
</div>
<div class="modal-body">
<p>From here you can search these documents. Enter your search terms below.</p>
Expand All @@ -142,7 +145,7 @@ <h4 class="modal-title" id="searchModalLabel">Search</h4>
<div class="modal-content">
<div class="modal-header">
<h4 class="modal-title" id="keyboardModalLabel">Keyboard Shortcuts</h4>
<button type="button" class="close" data-dismiss="modal"><span aria-hidden="true">&times;</span><span class="sr-only">Close</span></button>
<button type="button" class="btn-close" data-bs-dismiss="modal" aria-label="Close"></button>
</div>
<div class="modal-body">
<table class="table">
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