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Add support for non-diagonal supercells #1160

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Run time

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Job	Run time
pre-commit	3m 1s
docs	3m 7s
tests (3.9)	10m 26s
tests (3.10)	10m 5s
tests (3.11)	9m 59s
tests (3.12)	10m 19s
coverage	7s
	47m 4s