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JP-3721: Simplify ModelContainer#8831

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emolter merged 117 commits intospacetelescope:mainspacetelescope/jwst:mainfrom emolter:JP-3721emolter/jwst:JP-3721Copy head branch name to clipboardOct 22, 2024

+203-303

Commits

Commits on Jul 29, 2024

• add ModelLibrary

  

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• update tweakreg to use ModelLibrary

  

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• remove minimize_memory option for skymatch

  

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• update skymatch to use ModelLibrary

  

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• temporary ModelContainer to and from ModelLibrary converter, assign_mtwcs to library

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• replaced container with library in resample

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• Revert "temporary ModelContainer to and from ModelLibrary converter, assign_mtwcs to library"

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• put in nogroupid try except statements

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• ModelLibrary for resample imaging, ModelContainer for resample spec

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Commits on Jul 30, 2024

• Merge remote-tracking branch 'braingram/outlier_detection_steps' into JP-3690

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• fixing problems from merge of outlier detection changes

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• outlier detection to ModelLibrary for imaging modes

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• small fix to resample_spec

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• Merge remote-tracking branch 'upstream/master' into JP-3690

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• convert to ModelLibrary and back again in resample_spec_step to avoid duplicated utilities

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Commits on Jul 31, 2024

• bugfixes for outlier detection unit tests

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• expose on_disk for all steps, some cleanup to passing libraries between steps

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• using map_function where applicable, more unit test bug fixes

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• fix typo in pyproject.toml

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• bump version of stpipe

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• mark ModelLibrary as not part of stdatamodels

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• added changelog entry

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• first draft of docs changes

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Commits on Aug 1, 2024

• fixing regtest failures for spec3 pipeline, adding library to mtwcs

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• integrate assign_mtwcs changes with spec3 pipeline

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Commits on Aug 2, 2024

• debug coron3 pipeline

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• emptying data arrays in input to model_blender inside resample

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• decreasing memory usage of outlier step using profiler

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• revert refactor that introduced a bug in resample

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Commits on Aug 12, 2024

• update skymatch input spec

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• bugfix for failed asdf load of recursive wcs transform

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Commits on Aug 13, 2024

• Merge branch 'master' into JP-3690

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• small changes from memory profiling and review

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Commits on Aug 14, 2024

• bugfix for failed to load area extension and other metadata

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• handle asn_table and asn_pool metadata properly

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• make ind_asn_type case-insensitive

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• fix output filenames from outlier_detection

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Commits on Aug 15, 2024

• bugfix for HDRTAB association info in i2d files

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• re-add python 3.13 pin that was accidentally clobbered

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• reverting accidental clobber of stcal pin dependency

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Commits on Aug 16, 2024

• updates after reviews by myself and by @braingram

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• ruff style check

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Commits on Aug 19, 2024

• call img.area

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• bugfixes for remove s2d files and for mtimage regtest

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Commits on Aug 20, 2024

• Merge branch 'master' into JP-3690

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• attempted fix for resample and source_catalog result filenames

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• remove setting of asn pool and table name in resample

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• pushing bad things to remote to diagnose regtest

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• yet another attempt to fix filename issue

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• attempt to propagate fix also into source_catalog

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Commits on Aug 21, 2024

• bugfix for updating table and pool name in library._assign_member_to_model

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• fixes based on @braingram review

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• fix ruff style check and remove unnecessary comment

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Commits on Aug 22, 2024

• fix unit test and revert changes to file naming

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Commits on Aug 23, 2024

• new attempted fix of output filenames

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• removed one more manual change to output file naming

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• changed has_groups conditional to reflect master branch

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• attempted fix single regtest failure for miri image3 crf files

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Commits on Aug 27, 2024

• Merge branch master into JP-3690

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• fixes per @melanieclarke comments

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Commits on Aug 29, 2024

• first draft of minimal container

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• added basic context management

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• merge JP-3690

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Commits on Aug 30, 2024

• merge master into JP-3690

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• fixed failure to raise NoGroupID for in-memory models with None for observation parameters

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• start to modify pipelines to account for container changes

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Commits on Sep 5, 2024

• Merge branch 'JP-3690' into JP-3721

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• Merge branch 'master' into JP-3690

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• Merge branch 'JP-3690' into JP-3721

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• fix file naming with sourcemodelcontainer

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• removed schema url from container

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Commits on Sep 6, 2024

• Merge branch 'master' into JP-3721

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• removed some instances of container.meta

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Commits on Sep 10, 2024

• Merge branch 'master' into JP-3721

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Commits on Sep 11, 2024

• Merge branch 'master' into JP-3721

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• small fixes to metadata setting and tests

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Commits on Sep 17, 2024

• Merge remote-tracking branch 'upstream/master' into JP-3721

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• Merge remote-tracking branch 'upstream/master' into JP-3721

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• in the middle of fixing filename issues

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Commits on Sep 19, 2024

• Merge branch 'master' of https://github.com/spacetelescope/jwst into JP-3721

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Commits on Sep 23, 2024

• Merge branch 'main' of https://github.com/spacetelescope/jwst into JP-3721

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Commits on Sep 25, 2024

• Merge branch 'main' of https://github.com/spacetelescope/jwst into JP-3721

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• fix stpipe unit tests

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Commits on Sep 26, 2024

• draft fix for JP-2038

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• fix master background unit and regression test failures

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• fix regtest errors in niriss wfss stemming from extract_1d

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• Merge branch 'main' of https://github.com/spacetelescope/jwst into JP-3721

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• fix badpix_selfcal regtest failure

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• Merge branch 'main' of https://github.com/spacetelescope/jwst into JP-3721

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Commits on Sep 30, 2024

• Merge branch 'main' of https://github.com/spacetelescope/jwst into JP-3721

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Commits on Oct 7, 2024

• Merge branch 'main' of https://github.com/spacetelescope/jwst into JP-3721

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• revert changes that badly attempted fix for relative paths in asn

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• fixes from Perry review

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Commits on Oct 8, 2024

• Merge branch 'main' of https://github.com/spacetelescope/jwst into JP-3721

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• fix filename issues with nirspec ifu outlier detection

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• add docs for container vs library

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• small fixes from self-review

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Commits on Oct 9, 2024

• Merge branch 'main' of https://github.com/spacetelescope/jwst into JP-3721

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• update pyproject.toml

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• bugfix to avoid calling save_model directly on container

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Commits on Oct 10, 2024

• Merge branch 'main' of https://github.com/spacetelescope/jwst into JP-3721

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• Merge branch 'main' of https://github.com/spacetelescope/jwst into JP-3721

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• restore save method to container

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Commits on Oct 11, 2024

• added note to docs about lists

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• fixes from self review

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Commits on Oct 14, 2024

• Merge branch 'main' of https://github.com/spacetelescope/jwst into JP-3721

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• fix readthedocs build

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• make mypy happy

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Commits on Oct 16, 2024

• Merge branch 'main' of https://github.com/spacetelescope/jwst into JP-3721

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• fixes per @melanieclarke review

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• Merge branch 'main' of https://github.com/spacetelescope/jwst into JP-3721

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Commits on Oct 17, 2024

• Merge branch 'main' of https://github.com/spacetelescope/jwst into JP-3721

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• restore save_model_func to save method and added unit test

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• Merge branch 'main' of https://github.com/spacetelescope/jwst into JP-3721

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Commits on Oct 18, 2024

• Merge branch 'main' of https://github.com/spacetelescope/jwst into JP-3721

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• Add default file naming for list input to container, plus small change per Brett review

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• fix default file name logic

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