mapped names #13
Workflow file for this run
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| name: Pip | |
| on: | |
| workflow_dispatch: | |
| pull_request: | |
| push: | |
| branches: | |
| - master | |
| jobs: | |
| build: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| platform: [windows-latest, macos-latest, ubuntu-latest] | |
| python-version: ["3.11"] | |
| runs-on: ${{ matrix.platform }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: true | |
| - name: Apt install system dependencies (linux) | |
| if: ${{ startsWith(matrix.platform, 'ubuntu-') }} | |
| run: | | |
| echo "::group::Run sudo apt-get update" | |
| sudo apt-get update | |
| echo "::endgroup::" | |
| echo "::group::Run sudo apt-get install graphviz" | |
| sudo apt-get install graphviz | |
| echo "::endgroup::" | |
| echo "::group::Run dot -V" | |
| DOT_VERSION="$(dot -V 2>&1)" | |
| echo $DOT_VERSION; | |
| echo "::endgroup::" | |
| echo "::notice::Apt installed ${DOT_VERSION#dot - }" | |
| shell: bash | |
| - name: Brew install system dependencies (macos) | |
| if: ${{ startsWith(matrix.platform, 'macos-')}} | |
| run: | | |
| echo "::group::Run brew update --preinstall" | |
| brew update --preinstall | |
| echo "::endgroup::" | |
| echo "::group::Run brew install graphviz" | |
| brew install graphviz | |
| echo "::endgroup::" | |
| echo "::group::Run dot -V" | |
| DOT_VERSION="$(dot -V 2>&1)" | |
| echo $DOT_VERSION | |
| echo "::endgroup::" | |
| echo "::notice::Brew installed ${DOT_VERSION#dot - }" | |
| shell: bash | |
| - name: Choco install system dependencies (windows) | |
| if: ${{ startsWith(matrix.platform, 'windows-') }} | |
| run: | | |
| echo "::group::Run choco install --no-progress graphviz" | |
| choco install --no-progress graphviz | |
| echo "::endgroup::" | |
| echo "::group::Run dot -V" | |
| DOT_VERSION="$(dot -V 2>&1)" | |
| echo $DOT_VERSION | |
| echo "::endgroup::" | |
| echo "::notice::Choco installed ${DOT_VERSION#dot - }" | |
| shell: bash | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Add requirements | |
| run: python -m pip install --upgrade wheel setuptools biopython numpy pydot | |
| - name: Build and install | |
| run: pip install --verbose .[test] | |
| - name: Test | |
| run: | | |
| cd tests | |
| python -m pytest |