forked from ome/bio-formats-build
-
Notifications
You must be signed in to change notification settings - Fork 0
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
Repository: ome/bio-formats-build Excluded PRs: - PR 632 dependabot[bot] 'Bump ZarrReader from `9a9e662` to `b17c3ab`' (status: failure) Already up to date. Merged PRs: - PR 658 dependabot[bot] 'Bump bio-formats-documentation from `b07c8df` to `8dc4ea1`' - PR 659 dependabot[bot] 'Bump bioformats from `df36e69` to `ee508a0`' Repository: ome/ZarrReader Excluded PRs: - PR 95 dgault 'Class cast exception when parsing metadata' (status: failure) - PR 20 dgault 'ZarrReader: Use chunk API' (exclude comment) Updating 9a9e662..b17c3ab Previously merged: - PR 93 dgault 'Bump version to 0.5.3-SNAPSHOT' - PR 92 dgault 'Bump version to 0.5.2' - PR 91 dgault 'Bump Bio-Formats version to 7.3.1' Merged PRs: - PR 97 melissalinkert 'Bump Bio-Formats version to 8.0.1' - PR 98 dominikl 'Fix class cast and labels issue.' Repository: ome/bio-formats-documentation Already up to date. Merged PRs: - PR 394 pwalczysko 'Add sas.upenn.edu to ignore list linkchecker' Repository: ome/bio-formats-examples Already up to date. Merged PRs: - PR 69 dgault 'Add macro examples from OME 2020 NGFF workshop' Repository: openmicroscopy/bioformats Excluded PRs: - PR 4254 melissalinkert 'Memoizer: ask any ImageReader instances to remove all but the current reader' (stage: draft) - PR 4249 marcobitplane 'Imaris Reader: support for LZ4 compression and performance improvements' (user: marcobitplane) - PR 4196 melissalinkert 'DICOM: use FrameTimePointer to detect timelapse data' (label: exclude) - PR 4131 dgault 'VirtualImagePlus: Retain B&C settings for each slice' (status: failure) - PR 4092 NicoKiaru 'Commits an alternative Zeiss CZI Reader' (user: NicoKiaru) - PR 4000 XLEFReaderForBioformats 'Reworking LMSMetadata package and adding a new lif reader' (user: XLEFReaderForBioformats) - PR 3794 dgault 'Chunk API: Add new API and functionality for reading and writing chunks' (label: exclude) - PR 3618 dgault 'Memoizer: Persist caching to sub readers' (label: breaking) Already up to date. Merged PRs: - PR 4130 carandraug 'matlab/bfGetPlane.m: avoid use of makeDataArray2D when Octave (ome/bio-formats-octave-docker#29)' - PR 4195 WalkerKnapp 'Andor SIF: Support files larger than 4 GB and with non-fixed-size footers' - PR 4243 melissalinkert 'Update IExtraMetadataWriter.setExtraMetadata(...) to accept an Object' - PR 4252 melissalinkert 'Leica TCS: make sure XML file is on used files list' Repository: ome/ome-codecs Already up to date. Merged PRs: - PR 41 rharkes 'Add LZ4 compression/decompression' Repository: ome/ome-common-java Already up to date. Repository: ome/ome-jai Already up to date. Repository: ome/ome-mdbtools Already up to date. Repository: ome/ome-metakit Already up to date. Repository: ome/ome-model Already up to date. Merged PRs: - PR 174 jburel 'Remove docs' Repository: ome/ome-poi Already up to date. Repository: ome/ome-stubs Already up to date. Generated by BIOFORMATS-push#268 (https://merge-ci.openmicroscopy.org/jenkins/job/BIOFORMATS-push/268/)
- Loading branch information
1 parent
cd4f2df
commit 97aa09f
Showing
13 changed files
with
36 additions
and
36 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,48 +1,48 @@ | ||
[submodule "ome-common-java"] | ||
path = ome-common-java | ||
url = https://github.com/ome/ome-common-java.git | ||
branch = master | ||
url = https://github.com/snoopycrimecop/ome-common-java.git | ||
branch = merge_ci | ||
[submodule "ome-model"] | ||
path = ome-model | ||
url = https://github.com/ome/ome-model.git | ||
branch = master | ||
url = https://github.com/snoopycrimecop/ome-model.git | ||
branch = merge_ci | ||
[submodule "ome-poi"] | ||
path = ome-poi | ||
url = https://github.com/ome/ome-poi.git | ||
branch = master | ||
url = https://github.com/snoopycrimecop/ome-poi.git | ||
branch = merge_ci | ||
[submodule "ome-mdbtools"] | ||
path = ome-mdbtools | ||
url = https://github.com/ome/ome-mdbtools.git | ||
branch = master | ||
url = https://github.com/snoopycrimecop/ome-mdbtools.git | ||
branch = merge_ci | ||
[submodule "ome-jai"] | ||
path = ome-jai | ||
url = https://github.com/ome/ome-jai.git | ||
branch = master | ||
url = https://github.com/snoopycrimecop/ome-jai.git | ||
branch = merge_ci | ||
[submodule "ome-codecs"] | ||
path = ome-codecs | ||
url = https://github.com/ome/ome-codecs.git | ||
branch = master | ||
url = https://github.com/snoopycrimecop/ome-codecs.git | ||
branch = merge_ci | ||
[submodule "ome-metakit"] | ||
path = ome-metakit | ||
url = https://github.com/ome/ome-metakit.git | ||
branch = master | ||
url = https://github.com/snoopycrimecop/ome-metakit.git | ||
branch = merge_ci | ||
[submodule "ome-stubs"] | ||
path = ome-stubs | ||
url = https://github.com/ome/ome-stubs.git | ||
branch = master | ||
url = https://github.com/snoopycrimecop/ome-stubs.git | ||
branch = merge_ci | ||
[submodule "bioformats"] | ||
path = bioformats | ||
url = https://github.com/openmicroscopy/bioformats.git | ||
branch = develop | ||
url = https://github.com/snoopycrimecop/bioformats.git | ||
branch = merge_ci | ||
[submodule "bio-formats-documentation"] | ||
path = bio-formats-documentation | ||
url = https://github.com/ome/bio-formats-documentation.git | ||
branch = master | ||
url = https://github.com/snoopycrimecop/bio-formats-documentation.git | ||
branch = merge_ci | ||
[submodule "bio-formats-examples"] | ||
path = bio-formats-examples | ||
url = https://github.com/ome/bio-formats-examples.git | ||
branch = master | ||
url = https://github.com/snoopycrimecop/bio-formats-examples.git | ||
branch = merge_ci | ||
[submodule "ZarrReader"] | ||
path = ZarrReader | ||
url = https://github.com/ome/ZarrReader.git | ||
branch = main | ||
url = https://github.com/snoopycrimecop/ZarrReader.git | ||
branch = merge_ci |
Submodule ZarrReader
updated
5 files
+3 −3 | .github/workflows/maven.yml | |
+6 −1 | CHANGELOG.md | |
+1 −1 | README.md | |
+2 −2 | pom.xml | |
+16 −13 | src/loci/formats/in/ZarrReader.java |
Submodule bio-formats-documentation
updated
3 files
+5 −1 | sphinx/conf.py | |
+1 −1 | sphinx/users/iqm/index.rst | |
+9 −9 | src/main/resources/format-pages.txt |
Submodule bioformats
updated
6 files
Submodule ome-codecs
updated
2 files
+116 −0 | src/main/java/ome/codecs/LZ4Codec.java | |
+81 −0 | src/test/java/ome/codecs/LZ4CodecTest.java |
Submodule ome-model
updated
83 files