merge master -Dnone -Ihotfix -Ssuccess-only

Repository: ome/bio-formats-build Excluded PRs: - PR 501 dependabot[bot] 'Bump ZarrReader from `d1c6223` to `2d75020`' (user: dependabot[bot]) - PR 469 jburel 'install sphinx' (user: jburel) Already up-to-date. Repository: ome/ZarrReader Excluded PRs: - PR 58 dgault 'Add new option to list pixels in getUsedFiles' (user: dgault) - PR 53 dgault 'Reorder group keys' (user: dgault) - PR 20 dgault 'ZarrReader: Use chunk API' (user: dgault) Updating d1c6223..2d75020 Previously merged: - PR 59 jburel 'Actions update' Repository: ome/bio-formats-documentation Excluded PRs: - PR 330 jburel 'update uri' (user: jburel) Already up-to-date. Repository: ome/bio-formats-examples Excluded PRs: - PR 105 sbesson 'Bump logback dependency to 1.3.5' (user: sbesson) - PR 69 dgault 'Add macro examples from OME 2020 NGFF workshop' (user: dgault) Already up-to-date. Repository: openmicroscopy/bioformats Excluded PRs: - PR 4085 melissalinkert 'CV7000 improvements' (user: melissalinkert) - PR 4083 melissalinkert 'NDPI: correct for potential integer overflow in stored restart marker tag' (user: melissalinkert) - PR 4081 melissalinkert 'SVS: fix a variety of small issues' (user: melissalinkert) - PR 4080 melissalinkert 'Exporter plugin: remove any extra Channel elements' (user: melissalinkert) - PR 4079 melissalinkert 'Leica LIF: throw a nicer exception if no images are found' (user: melissalinkert) - PR 4078 melissalinkert 'OIR: fix off-by-one in XML block reading' (user: melissalinkert) - PR 4077 melissalinkert 'TillVision: fix some metadata parsing and .pst detection issues' (user: melissalinkert) - PR 4076 melissalinkert 'VSI: fix uncompressed BGR data' (user: melissalinkert) - PR 4075 melissalinkert 'Photoshop TIFF: fix plane reading with memoization' (user: melissalinkert) - PR 4074 melissalinkert 'Gel: check IFD count in isThisType' (user: melissalinkert) - PR 4073 melissalinkert 'OME-TIFF: optionally fail fast if an invalid file is encountered' (user: melissalinkert) - PR 4072 melissalinkert 'Ventana: fix tile arithmetic for smallest resolutions' (user: melissalinkert) - PR 4071 melissalinkert 'IVision: improve version and data type checks in isThisType' (user: melissalinkert) - PR 4070 melissalinkert 'Gatan DM3: be more defensive in parsing acquisition mode' (user: melissalinkert) - PR 4061 CGDogan 'Don't fail on non-4:4:4 JPEG' (user: CGDogan) - PR 4059 CGDogan 'TiffSaver: produce valid 4-channel RGBA images' (user: CGDogan) - PR 4057 melissalinkert 'Add CodecOptions.disableChromaSubsampling' (user: melissalinkert) - PR 4051 CGDogan 'fix aplreader throwing nullptrexception' (user: CGDogan) - PR 4016 melissalinkert 'Add API and DICOM-specific implementations for providing supplemental metadata during conversion' (user: melissalinkert) - PR 4000 XLEFReaderForBioformats 'Reworking LMSMetadata package and adding a new lif reader' (user: XLEFReaderForBioformats) - PR 3992 melissalinkert 'Allow reading and writing compressed tiles' (user: melissalinkert) - PR 3956 sbesson 'Bump sl4j-api to 2.x' (user: sbesson) - PR 3939 dgault 'ImagePlusReader: handle IndexColorModel' (user: dgault) - PR 3902 melissalinkert 'LSID validation' (user: melissalinkert) - PR 3898 melissalinkert 'InCell 1000/2000 field count and plane metadata fixes' (user: melissalinkert) - PR 3872 arvequina 'New codec integration Jetraw' (user: arvequina) - PR 3794 dgault 'Chunk API: Add new API and functionality for reading and writing chunks' (user: dgault) - PR 3680 iwbh15 'Performance increase in writeIFD' (user: iwbh15) - PR 3618 dgault 'Memoizer: Persist caching to sub readers' (user: dgault) Already up-to-date. Repository: ome/ome-codecs Excluded PRs: - PR 29 iwbh15 'Disable chroma subsampling in JPEGCodec' (user: iwbh15) - PR 24 dependabot[bot] 'Bump testng from 6.8 to 7.7.0' (user: dependabot[bot]) - PR 21 dgault 'Replace one-jai with jai-imageio-jpeg2000' (user: dgault) Already up-to-date. Repository: ome/ome-common-java Excluded PRs: - PR 82 melissalinkert 'URLHandle: fall back to resetting stream if resetting to a mark fails' (user: melissalinkert) - PR 73 sbesson 'Bump sl4j-api to 2.x' (user: sbesson) - PR 72 dependabot[bot] 'Bump testng from 6.8 to 7.7.0' (user: dependabot[bot]) - PR 59 NicoKiaru 'adds AverageImageScaler implementation of IImageScaler' (user: NicoKiaru) Already up-to-date. Repository: ome/ome-jai Already up-to-date. Repository: ome/ome-mdbtools Already up-to-date. Repository: ome/ome-metakit Already up-to-date. Repository: ome/ome-model Excluded PRs: - PR 174 jburel 'Remove docs' (user: jburel) Already up-to-date. Repository: ome/ome-poi Already up-to-date. Repository: ome/ome-stubs Already up-to-date. Generated by BIOFORMATS-push#1550 (https://latest-ci.openmicroscopy.org/jenkins/job/BIOFORMATS-push/1550/)
snoopycrimecop · Aug 23, 2023 · 49b74d6 · 49b74d6
1 parent 88832bd
commit 49b74d6
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Showing 13 changed files with 36 additions and 36 deletions.
diff --git a/.gitmodules b/.gitmodules
@@ -1,48 +1,48 @@
 [submodule "ome-common-java"]
 	path = ome-common-java
-	url = https://github.com/ome/ome-common-java.git
-	branch = master
+	url = https://github.com/snoopycrimecop/ome-common-java.git
+	branch = latest_ci
 [submodule "ome-model"]
 	path = ome-model
-	url = https://github.com/ome/ome-model.git
-	branch = master
+	url = https://github.com/snoopycrimecop/ome-model.git
+	branch = latest_ci
 [submodule "ome-poi"]
 	path = ome-poi
-	url = https://github.com/ome/ome-poi.git
-	branch = master
+	url = https://github.com/snoopycrimecop/ome-poi.git
+	branch = latest_ci
 [submodule "ome-mdbtools"]
 	path = ome-mdbtools
-	url = https://github.com/ome/ome-mdbtools.git
-	branch = master
+	url = https://github.com/snoopycrimecop/ome-mdbtools.git
+	branch = latest_ci
 [submodule "ome-jai"]
 	path = ome-jai
-	url = https://github.com/ome/ome-jai.git
-	branch = master
+	url = https://github.com/snoopycrimecop/ome-jai.git
+	branch = latest_ci
 [submodule "ome-codecs"]
 	path = ome-codecs
-	url = https://github.com/ome/ome-codecs.git
-	branch = master
+	url = https://github.com/snoopycrimecop/ome-codecs.git
+	branch = latest_ci
 [submodule "ome-metakit"]
 	path = ome-metakit
-	url = https://github.com/ome/ome-metakit.git
-	branch = master
+	url = https://github.com/snoopycrimecop/ome-metakit.git
+	branch = latest_ci
 [submodule "ome-stubs"]
 	path = ome-stubs
-	url = https://github.com/ome/ome-stubs.git
-	branch = master
+	url = https://github.com/snoopycrimecop/ome-stubs.git
+	branch = latest_ci
 [submodule "bioformats"]
 	path = bioformats
-	url = https://github.com/openmicroscopy/bioformats.git
-	branch = develop
+	url = https://github.com/snoopycrimecop/bioformats.git
+	branch = latest_ci
 [submodule "bio-formats-documentation"]
 	path = bio-formats-documentation
-	url = https://github.com/ome/bio-formats-documentation.git
-	branch = master
+	url = https://github.com/snoopycrimecop/bio-formats-documentation.git
+	branch = latest_ci
 [submodule "bio-formats-examples"]
 	path = bio-formats-examples
-	url = https://github.com/ome/bio-formats-examples.git
-	branch = master
+	url = https://github.com/snoopycrimecop/bio-formats-examples.git
+	branch = latest_ci
 [submodule "ZarrReader"]
 	path = ZarrReader
-	url = https://github.com/ome/ZarrReader.git
-	branch = main
+	url = https://github.com/snoopycrimecop/ZarrReader.git
+	branch = latest_ci
diff --git a/ZarrReader b/ZarrReader
diff --git a/bio-formats-documentation b/bio-formats-documentation
diff --git a/bio-formats-examples b/bio-formats-examples
diff --git a/bioformats b/bioformats
diff --git a/ome-codecs b/ome-codecs
diff --git a/ome-common-java b/ome-common-java
diff --git a/ome-jai b/ome-jai
diff --git a/ome-mdbtools b/ome-mdbtools
diff --git a/ome-metakit b/ome-metakit
diff --git a/ome-model b/ome-model
diff --git a/ome-poi b/ome-poi
diff --git a/ome-stubs b/ome-stubs