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ci: force installation of MsCoreUtils from github
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jorainer committed Apr 2, 2024
1 parent 9fa4fa6 commit b1922c5
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Showing 2 changed files with 5 additions and 4 deletions.
5 changes: 3 additions & 2 deletions .github/workflows/check-bioc.yml
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Expand Up @@ -54,8 +54,8 @@ jobs:
matrix:
config:
- { os: ubuntu-latest, r: 'devel', bioc: 'devel', cont: "bioconductor/bioconductor_docker:devel", rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest" }
- { os: macOS-latest, r: 'devel', bioc: '3.19'}
- { os: windows-latest, r: 'devel', bioc: '3.19'}
- { os: macOS-latest, r: 'next', bioc: '3.19'}
- { os: windows-latest, r: 'next', bioc: '3.19'}
env:
R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
RSPM: ${{ matrix.config.rspm }}
Expand Down Expand Up @@ -178,6 +178,7 @@ jobs:
## Ideally, all dependencies should get installed in the first pass.
## Pass #1 at installing dependencies
BiocManager::install("RforMassSpectrometry/MsCoreUtils")
BiocManager::install(c("ncdf4", "mzR"))
message(paste('****', Sys.time(), 'pass number 1 at installing dependencies: local dependencies ****'))
remotes::install_local(dependencies = TRUE, repos =
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4 changes: 2 additions & 2 deletions DESCRIPTION
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Expand Up @@ -41,8 +41,8 @@ Authors@R: c(
role = "ctb",
comment = c(ORCID = "0000-0002-5492-6904")),
person(given = "Carl", family = "Brunius",
email = "[email protected]",
role = "ctb",
email = "[email protected]",
role = "ctb",
comment = c(ORCID = "0000-0003-3957-870X"))
)
Depends:
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