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Update README.md
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sneddonucsf authored Jul 6, 2018
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Expand Up @@ -10,7 +10,7 @@ seurat_v2.R - initialize seurat object from 10X Genomics cellranger outputs. Inc
clustering_markers_v2.R - clustering and tSNE visualization for v2 datasets. <br /><br />
seurat_object_analysis_v1_and_v2.R - downstream analysis and plotting functions for seurat object created by seurat_v1.R or seurat_v2.R. <br /><br />
merge_clusters.R - merge clusters that do not meet gene threshold. Used for both v1 and v2 datasets. <br /><br />
prepare_for_monocle_v1.R - subcluster cells of interest and perform linear regression, but not scaling in order to input normalized, regressed values into monocle with monocle_seurat_input_v1.R
prepare_for_monocle_v1.R - subcluster cells of interest and perform linear regression, but not scaling in order to input normalized, regressed values into monocle with monocle_seurat_input_v1.R <br /><br />
monocle_seurat_input_v1.R - monocle script using seurat batch corrected values as input for v1 merged timecourse datasets. <br /><br />
monocle_lineage_trace.R - monocle script using nUMI as input for v2 lineage traced dataset. <br /><br />
monocle_object_analysis.R - downstream analysis for monocle object - BEAM and plotting. <br /><br />
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