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Update README.md
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sneddonucsf authored Jul 6, 2018
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Expand Up @@ -46,7 +46,7 @@ E17_v2_agg_endocrine_seur_ob - E17.5 aggregated V2 Dataset. Only endocrine cells

merged_v2_endocrine_seur_ob. - E12.5, E14.5, E17.5 (aggregated) V2 Dataset. Only endocrine cells. Seurat object. Grouped by "merged" in @meta.data slot. Corresponds to Fig. 5h. Generated by CCA_aligment_v2.R and CCA_merging_v2.R scripts. <br /><br />

E14_Fev_lineage_endocrine_seur_ob. - E14.5 Fev-Cre;mTmG lineage traced V2 Dataset. Only endocrine cells. Seurat object. Grouped by "res.1.4" in @meta.data slot. Corresponds to Fig. 6h. "GFP" and "GFP_Bi" in @meta.data refer to GFP counts and binary "yes" or "no" for cells with >0 GFP counts.<br /><br />
E14_fev_lineage_endocrine_seur_ob. - E14.5 Fev-Cre;mTmG lineage traced V2 Dataset. Only endocrine cells. Seurat object. Grouped by "res.1.4" in @meta.data slot. Corresponds to Fig. 6h. "GFP" and "GFP_Bi" in @meta.data refer to GFP counts and binary "yes" or "no" for cells with >0 GFP counts.<br /><br />

Monocle objects - includes V1 seurat objects used for input (regression with no scaling) and resulting monocle object. <br /><br />

Expand All @@ -62,7 +62,7 @@ merge_fev_endocrine_seur_ob - E12.5, E14.5, E17.5 V1 Dataset. Subclustered epith

merge_fev_endocrine_monocle_ob - Resulting monocle object generated from merge_fev_endocrine_seur_ob. Grouped by "merged_clus" in phenoData. Corresponds to Supplementary Fig. 8a. <br /><br />


E14_fev_lineage_monocle_ob - Resulting monocle objected generated from E14_fev_lineage_endocrine_seur_ob. Used monocle_lineage_trace.R script. Grouped by "res.1.4" in phenoData. Corresponds to Fig. 7a.



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