v5.5.0

5.5.0 (2024-04-09)

Features

• add ability to store variants in a population database (BCF) (#288) (e52c29b)
• add alphamissense linkout (#294) (a775627)

v5.4.1

5.4.1 (2024-03-28)

Bug Fixes

• use latest wrapper for obtaining known variants (#292) (1268dd9)

v5.4.0

5.4.0 (2024-03-23)

Features

• support alphamissense and spliceai (#287) (91a81fa)

Bug Fixes

• update to latest cutadapt (#291) (ca73fa7)
• use latest wrapper for obtaining known variants (#290) (c8cf4df)

v5.3.1

5.3.1 (2024-03-12)

Bug Fixes

• avoid piping if there is no glob pattern in the given fastqs (#286) (645e5c0)
• require Snakemake 8 (#284) (9a19971)

v5.3.0

5.3.0 (2024-02-27)

Features

• fusion calling (experimental) (#222) (d0b45ba)

Performance Improvements

• reorganize tests to first only do dry-runs and then run long and short tests in one runner each (#280) (ee973c6)

v5.2.0

5.2.0 (2023-11-30)

Features

• colored tick plots in datavzrd report (#279) (757aa0e)
• improve and run sra download ci test case (#276) (074661e)
• map primers by bwa and update datavzrd template (#275) (12f22e9)

Bug Fixes

• unique values when extracting samples column for repeated samples (in multiple groups) (#278) (aaac1b5)

v5.1.0

5.1.0 (2023-11-10)

Features

• gene coverage report (#270) (19ee0eb)
• genomenexus link (#271) (16c4a50)

Bug Fixes

• update fastqc wrapper to v1.10.0 to include memory parsing fix (#272) (ed8b391)

v5.0.2

5.0.2 (2023-10-09)

Bug Fixes

• remove superfluous import of FTP remote provider (ae68b90)

v5.0.1

5.0.1 (2023-08-25)

Bug Fixes

• general fixes and optimizations (#263) (cc486d7)
• sample has umis (#265) (914ddfa)
• switch mem_gb to mem_mb (#262) (6bda9b5)

v5.0.0

5.0.0 (2023-08-15)

⚠ BREAKING CHANGES

• make annotations for candidate variant filtering configurable (#251)

Features

• allow umis in both paired end reads (#257) (2fdc798)
• make annotations for candidate variant filtering configurable (#251) (b51bd9d)

Bug Fixes

• allow using one sample in multiple groups (#258) (e336f7a)