v5.11.0

5.11.0 (2025-01-20)

Features

• add option to allow mapping to pangenome (#274) (e86cc81)
• allow setting of custom alignment properties (#346) (2d2a05e)
• support for samples w/ and w/o primers (#344) (7c24fb8)
• Update datavzrd-spells version for boolean spell and add clin_sig spell (#342) (185b2fe)

Bug Fixes

• cache ref data (#348) (0cf0fa8)
• fix datavzrd template for likely pathogenic interpretation (#350) (760f3b3)
• fix filtering primerless reads by pinning rust-script (#339) (ff37174)
• fix short observation plot (#334) (0d8dba7)
• sort order of marked duplicates (#351) (194357b)
• update to varlociraptor 8.5.1 (7cbd077)
• update wrapper versions to fix yte template bug (#349) (d175726)

Performance Improvements

• group calling jobs per patient/sample-group such that they are submitted to the same cluster/cloud nodes in order to save I/O (#338) (aa583d3)

v5.10.1

5.10.1 (2024-10-23)

Bug Fixes

• fix excluding events from the report (#332) (acdd9e3)
• more explicity pinning of varlociraptor version (f66c6a5)
• processing vembrane config (#330) (1629c6d)

v5.10.0

5.10.0 (2024-09-26)

Features

• allow excluding events from the report (#324) (b5d1966)

Bug Fixes

• fix testcase rule for remote storage (#322) (1f2f3b2)
• update to latest datavzrd and vembrane (#329) (6c5cc97)

v5.9.0

5.9.0 (2024-08-26)

Features

• add maftools output (#297) (e749260)

v5.8.4

5.8.4 (2024-08-13)

Bug Fixes

• make the aux-files example use the existing ANN field SYMBOL (#320) (0dd0c36)

v5.8.3

5.8.3 (2024-07-24)

Miscellaneous Chores

• release 5.8.3 (2fc6a49)
• update datavzrd wrapper: #316

v5.8.2

5.8.2 (2024-07-18)

Bug Fixes

• update to latest datavzrd (b8bd1fc)

v5.8.1

5.8.1 (2024-07-17)

Bug Fixes

• always use the same type for label list in datavzrd config (#312) (9d20f50)
• fix typo in description of variant calls tables (9d02274)
• minor fixes (#311) (a96e071)

v5.8.0

5.8.0 (2024-07-01)

Features

• mutational signatures (#308) (f037305)

Bug Fixes

• fusion sample selection (#310) (d817454)

v5.7.0

5.7.0 (2024-06-07)

Features

• Add improved visualization for clinical significance (#301) (82eb4dd)
• add linkouts to non-coding tables (#302) (15ce609)
• support selecting the fdr control mode via the config (#306) (ac27206)

Bug Fixes

• download sra (#304) (f77b6be)