feat: colored tick plots in datavzrd report (#279)

* feat: colored tick plots * adjust colors
snakemake-workflows · Nov 30, 2023 · 757aa0e · 757aa0e
1 parent 12f22e9
commit 757aa0e
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Showing 2 changed files with 24 additions and 12 deletions.
diff --git a/workflow/resources/datavzrd/variant-calls-template.datavzrd.yaml b/workflow/resources/datavzrd/variant-calls-template.datavzrd.yaml
@@ -233,12 +233,18 @@ views:
                   - "#ff5555"
           "regex('.+: allele frequency')":
             plot:
-              heatmap:
+              ticks:
                 scale: "linear"
-                domain: [0.0, 0.05, 1.0]
-                range:
-                  - white
-                  - "#d3e9f8"
+                domain: [0.0, 1.0]
+                aux-domain-columns:
+                  - "regex('.+: allele frequency')"
+                color:
+                  scale: "linear"
+                  domain: [0.0, 0.05, 0.0500000001, 1.0]
+                  range:
+                  - "#ffd6b3"
+                  - "#ff7f0e"
+                  - "#a8d2f0"
                   - "#1f77b4"
           "regex('.+: read depth')":
             plot:
@@ -341,12 +347,18 @@ views:
                   - "#ecca00"
           "regex('.+: allele frequency')":
             plot:
-              heatmap:
+              ticks:
                 scale: "linear"
-                domain: [0.0, 0.05, 1.0]
-                range:
-                  - white
-                  - "#d3e9f8"
+                domain: [0.0, 1.0]
+                aux-domain-columns:
+                  - "regex('.+: allele frequency')"
+                color:
+                  scale: "linear"
+                  domain: [0.0, 0.05, 0.0500000001, 1.0]
+                  range:
+                  - "#ffd6b3"
+                  - "#ff7f0e"
+                  - "#a8d2f0"
                   - "#1f77b4"
           "regex('.+: read depth')":
             plot:

diff --git a/workflow/rules/datavzrd.smk b/workflow/rules/datavzrd.smk
@@ -101,7 +101,7 @@ rule datavzrd_variants_calls:
     log:
         "logs/datavzrd_report/{batch}.{event}.log",
     wrapper:
-        "v2.10.0/utils/datavzrd"
+        "v3.0.2/utils/datavzrd"
 
 
 rule bedtools_merge:
@@ -167,4 +167,4 @@ rule datavzrd_coverage:
     log:
         "logs/datavzrd_report/{group}.coverage.log",
     wrapper:
-        "v2.10.0/utils/datavzrd"
+        "v3.0.2/utils/datavzrd"