fix: obtain domain for tick plots in datavzrd report from all related…

… columns (#142) * fix: use obtain domain for tick plots in datavzrd report from all related columns Needs datavzrd 1.13 * datavzrd version * use list * Update variant-calls-template.datavzrd.yaml * convert group series to list Co-authored-by: Felix Mölder <[email protected]>
snakemake-workflows · May 10, 2022 · 2e57b12 · 2e57b12
1 parent 2858ca8
commit 2e57b12
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diff --git a/workflow/envs/datavzrd.yaml b/workflow/envs/datavzrd.yaml
@@ -1,4 +1,4 @@
 channels:
   - conda-forge
 dependencies:
-  - datavzrd =1.10
+  - datavzrd =1.13
diff --git a/workflow/resources/datavzrd/variant-calls-template.datavzrd.yaml b/workflow/resources/datavzrd/variant-calls-template.datavzrd.yaml
@@ -120,6 +120,7 @@ views:
               heatmap:
                 scale: ordinal
                 color-scheme: paired
+                aux-domain-columns: ?list(params.groups)
 
     ?for gene, path in params.variant_oncoprints:
       ?f"overview-{gene}":
@@ -191,10 +192,14 @@ views:
             ticks:
               scale: "linear"
               domain: [0.0, 1.0]
+              aux-domain-columns:
+                - "regex('.+: allele frequency')"
         "regex('.+: read depth')":
           plot: 
             ticks:
               scale: "linear"
+              aux-domain-columns:
+                - "regex('.+: read depth')"
         "regex('prob: .+')":
           plot:
             heatmap: