Merge branch 'master' of github.com:smistad/FAST #193
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: CI macOS 11 x86_64 | |
| on: | |
| push: | |
| branches: [ master ] | |
| pull_request: | |
| branches: [ master ] | |
| release: | |
| types: [ published ] | |
| workflow_dispatch: | |
| env: | |
| BUILD_TYPE: Release | |
| MACOSX_DEPLOYMENT_TARGET: 10.13 | |
| jobs: | |
| build: | |
| runs-on: macos-11 | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Install dependencies | |
| run: | | |
| brew reinstall zlib | |
| brew install openslide pcre libomp | |
| # Install a specific version of libomp (14.0.6) since newer versions fail with cmake | |
| #curl https://raw.githubusercontent.com/Homebrew/homebrew-core/c87d6a0c8360c4684e3375ce6c4576214acdd71b/Formula/libomp.rb > $(find $(brew --repository) -name libomp.rb) && brew reinstall libomp | |
| - name: Setup pyenv | |
| env: | |
| ACTIONS_ALLOW_UNSECURE_COMMANDS: true | |
| MACOSX_DEPLOYMENT_TARGET: 10.13 | |
| PYTHON_CONFIGURE_OPTS: "--enable-framework" | |
| CFLAGS: "-Wno-implicit-function-declaration" | |
| LDFLAGS: "-L/usr/local/opt/zlib/lib" | |
| CPPFLAGS: "-I/usr/local/opt/zlib/include" | |
| PKG_CONFIG_PATH: "/usr/local/opt/zlib/lib/pkgconfig" | |
| uses: "gabrielfalcao/pyenv-action@v5" | |
| with: | |
| default: 3.6.9 | |
| - name: Install pip dependencies | |
| run: | | |
| pip3 install --upgrade pip | |
| pip3 install numpy==1.19.5 twine wheel==0.37.1 | |
| - name: Configure CMake | |
| run: | | |
| cmake -B ${{github.workspace}}/build \ | |
| -DCMAKE_BUILD_TYPE=${{env.BUILD_TYPE}}\ | |
| -DCMAKE_OSX_ARCHITECTURES:STRING="x86_64" \ | |
| -DFAST_MODULE_OpenVINO=ON \ | |
| -DFAST_MODULE_Dicom=ON \ | |
| -DFAST_MODULE_WholeSlideImaging=ON \ | |
| -DFAST_MODULE_OpenIGTLink=ON \ | |
| -DFAST_MODULE_Clarius=ON \ | |
| -DFAST_MODULE_TensorFlow=ON \ | |
| -DFAST_MODULE_HDF5=ON \ | |
| -DFAST_MODULE_Plotting=ON \ | |
| -DFAST_MODULE_Python=ON \ | |
| -DFAST_Python_Version="3.6" \ | |
| -DFAST_Python_Include="$(dirname $(pyenv which python))/../include/python3.6m/" \ | |
| -DFAST_Python_Library="$(dirname $(pyenv which python))/../lib/libpython3.6.dylib" \ | |
| -DFAST_MODULE_RealSense=OFF \ | |
| -DFAST_BUILD_EXAMPLES=ON | |
| - name: Build | |
| run: cmake --build ${{github.workspace}}/build --config ${{env.BUILD_TYPE}} -j 4 | |
| - name: Build Python wheel | |
| env: | |
| MACOSX_DEPLOYMENT_TARGET: 10.13 | |
| run: cmake --build ${{github.workspace}}/build --config ${{env.BUILD_TYPE}} --target python-wheel -j 4 | |
| - name: Package | |
| run: cmake --build ${{github.workspace}}/build --config ${{env.BUILD_TYPE}} --target package -j 4 | |
| - name: Upload archive package | |
| uses: actions/upload-artifact@v2 | |
| with: | |
| name: Archive package (tar.xz) | |
| path: ${{github.workspace}}/build/fast_*.tar.xz | |
| if-no-files-found: error | |
| - name: Upload Python wheel | |
| uses: actions/upload-artifact@v2 | |
| with: | |
| name: Python wheel | |
| path: ${{github.workspace}}/build/python/dist/pyFAST-*.whl | |
| if-no-files-found: error | |
| - name: Upload archive package to release | |
| if: ${{ github.event_name == 'release' }} | |
| uses: svenstaro/upload-release-action@v2 | |
| with: | |
| repo_token: ${{ secrets.GITHUB_TOKEN }} | |
| file: ${{github.workspace}}/build/fast_*.tar.xz | |
| file_glob: true | |
| tag: ${{ github.ref }} | |
| overwrite: true | |
| - name: Upload Python wheel to release | |
| if: ${{ github.event_name == 'release' }} | |
| uses: svenstaro/upload-release-action@v2 | |
| with: | |
| repo_token: ${{ secrets.GITHUB_TOKEN }} | |
| file: ${{github.workspace}}/build/python/dist/pyFAST-*.whl | |
| file_glob: true | |
| tag: ${{ github.ref }} | |
| overwrite: true | |
| - name: Upload Python wheel to PyPi | |
| if: ${{ github.event_name == 'release' && !contains(github.ref, 'rc') }} | |
| run: | | |
| twine upload --username __token__ --password ${{ secrets.PYPI_API_TOKEN }} ${{github.workspace}}/build/python/dist/pyFAST-*.whl | |
| - name: Test PyPi upload | |
| if: ${{ github.event_name == 'release' && !contains(github.ref, 'rc') }} | |
| run: | | |
| sleep 30 | |
| pip3 install pyfast==${GITHUB_REF#refs/tags/v} | |
| shell: bash | |
| # test-cpp: | |
| # name: Run C++ Tests | |
| # needs: [build] | |
| # runs-on: [self-hosted, macos] | |
| # steps: | |
| # - name: Download artifacts | |
| # uses: actions/download-artifact@v3 | |
| # with: | |
| # name: 'Archive package (tar.xz)' | |
| # path: ${{github.workspace}}/download/ | |
| # - name: Extract artifact | |
| # run: | | |
| # mkdir -p ${{github.workspace}}/download/ | |
| # cd ${{github.workspace}}/download/ | |
| # tar -xf fast_*.tar.xz -C ${{github.workspace}} | |
| # - name: Download test data | |
| # run: | | |
| # cd ${{github.workspace}} | |
| # cd fast* | |
| # cd fast/bin/ | |
| # ./downloadTestData | |
| # - name: Run tests | |
| # run: | | |
| # cd ${{github.workspace}} | |
| # cd fast_* | |
| # cd fast/bin/ | |
| # ./testFAST ~[visual]~[unstablemac] | |
| # - name: Cleanup | |
| # if: always() | |
| # run: | | |
| # rm -Rf ${{github.workspace}} | |
| # rm -Rf $HOME/FAST/kernel_binaries/* | |
| # | |
| # test-python: | |
| # name: Run Python Tests | |
| # needs: [build] | |
| # runs-on: [self-hosted, macos] | |
| # steps: | |
| # - uses: actions/checkout@v2 | |
| # - name: Download artifacts | |
| # uses: actions/download-artifact@v3 | |
| # with: | |
| # name: 'Python wheel' | |
| # path: ${{github.workspace}}/download/ | |
| # - name: Create environment and install python packages | |
| # run: | | |
| # cd ${{github.workspace}} | |
| # mkdir tmp | |
| # cd tmp | |
| # virtualenv -p python3 venv | |
| # source venv/bin/activate | |
| # pip3 install pytest | |
| # pip3 install ${{github.workspace}}/download/pyFAST-*.whl | |
| # - name: Run tests | |
| # run: | | |
| # cd ${{github.workspace}}/tmp/ | |
| # source venv/bin/activate | |
| # pytest ../source/FAST/ | |
| # - name: Cleanup | |
| # if: always() | |
| # run: | | |
| # rm -Rf ${{github.workspace}}/download/ | |
| # rm -Rf ${{github.workspace}}/tmp/ | |
| # rm -Rf $HOME/FAST/kernel_binaries/* |