Converted manifest to single list of files

[dogversioning]

This PR makes the following changes:

• Manifest list of files is now a single list, and finds the appropriate running mechanism via file extension
  • The old file lists are deprecated, but will still work for older studies
• TOML configuration-driven table construction is now called a workflow

Checklist

• Consider if documentation in docs/ needs to be updated
  • If you've changed the structure of a table, you may need to run generate-md
  • If you've added/removed core study fields that not in US Core, update our list of those in core-study-details.md
• Consider if tests should be added
• Update template repo if there are changes to study configuration in manifest.toml

[github-actions]

☂️ Python Coverage

current status: ✅

Overall Coverage

Lines	Covered	Coverage	Threshold	Status
2295	2287	100%	90%	🟢

New Files

No new covered files...

Modified Files

File	Coverage	Status
cumulus_library/actions/builder.py	100%	🟢
cumulus_library/builders/protected_table_builder.py	100%	🟢
cumulus_library/cli.py	100%	🟢
cumulus_library/enums.py	100%	🟢
cumulus_library/study_manifest.py	100%	🟢
TOTAL	100%	🟢

updated for commit: 7590dca by action🐍

[mikix]

Nice