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python package requirements
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skylogic004 committed Jul 23, 2023
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4 changes: 2 additions & 2 deletions README.md
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Expand Up @@ -27,7 +27,7 @@ The main requirements are:
- Python 3.9
- Tensorflow 2.6.0

A complete listing of the python package environment (which uses `pip`) is listed in `requirements.txt`. **!!! MAKE THIS !!!!!!!!!!!!!!!!**
A complete listing of the python package environment (which uses anaconda) is listed in `requirements.txt`.


# Installation
Expand Down Expand Up @@ -218,7 +218,7 @@ Additional settings are available in `config.toml` (which is created after runni

## Hyperparameter Optimization (HPO)

Neural network hyperparameter requires [hyperopt](https://github.com/hyperopt/hyperopt) version `0.2.7`.
Neural network hyperparameter requires [hyperopt](https://github.com/hyperopt/hyperopt) version `0.2.5`.

Performing HPO with hyperopt requires running a "master" process which maintains a MongoDB database of hyperparameter configurations (known as trials) that have been tried so far
and decides what configuration to try next.
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321 changes: 321 additions & 0 deletions requirements.txt
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# This file may be used to create an environment using:
# $ conda create --name <env> --file <this file>
# platform: win-64
_r-mutex=1.0.1=anacondar_1
_tflow_select=2.3.0=mkl
abseil-cpp=20210324.2=h0e60522_0
absl-py=1.0.0=pyhd8ed1ab_0
aiohttp=3.8.1=py39hb82d6ee_1
aiosignal=1.2.0=pyhd8ed1ab_0
argon2-cffi=21.3.0=pyhd8ed1ab_0
argon2-cffi-bindings=21.2.0=py39hb82d6ee_2
arrow-cpp=3.0.0=py39haed7efe_4_cpu
arxiv-latex-cleaner=0.1.28=dev_0
astor=0.8.1=pyh9f0ad1d_0
astunparse=1.6.3=pyhd8ed1ab_0
async-timeout=4.0.2=pyhd8ed1ab_0
attrs=21.4.0=pyhd8ed1ab_0
aws-c-cal=0.4.5=hffb5579_7
aws-c-common=0.5.1=h8ffe710_0
aws-c-event-stream=0.2.7=h141f785_0
aws-c-io=0.9.0=hc33d8df_1
aws-checksums=0.1.11=hc33d8df_2
aws-sdk-cpp=1.8.138=hac61a3b_3
backcall=0.2.0=pyh9f0ad1d_0
backports=1.1=pyhd3eb1b0_0
backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0
beautifulsoup4=4.11.1=pyha770c72_0
beepy=1.0.7=pypi_0
bleach=5.0.0=pyhd8ed1ab_0
blinker=1.4=py_1
box2d-py=2.3.8=py39h415ef7b_5
brotli=1.0.9=h8ffe710_7
brotli-bin=1.0.9=h8ffe710_7
brotlipy=0.7.0=py39hb82d6ee_1004
bzip2=1.0.8=h8ffe710_4
c-ares=1.18.1=h8ffe710_0
ca-certificates=2023.05.30=haa95532_0
cached-property=1.5.2=hd8ed1ab_1
cached_property=1.5.2=pyha770c72_1
cachetools=5.0.0=pyhd8ed1ab_0
certifi=2023.5.7=pyhd8ed1ab_0
cffi=1.15.0=py39h0878f49_0
charset-normalizer=2.0.12=pyhd8ed1ab_0
clang=5.0=pypi_0
click=8.1.2=py39hcbf5309_0
cloudpickle=2.0.0=pypi_0
colorama=0.4.4=pyh9f0ad1d_0
configparser=5.2.0=pyhd8ed1ab_0
configspace=0.4.19=py39h5d4886f_0
cryptography=36.0.2=py39h7bc7c5c_1
cudatoolkit=11.2.0=h608a323_8
cycler=0.11.0=pyhd8ed1ab_0
cython=0.29.28=py39h415ef7b_2
debugpy=1.6.0=py39h415ef7b_0
decorator=5.1.1=pyhd8ed1ab_0
defusedxml=0.7.1=pyhd8ed1ab_0
docutils=0.18.1=py39hcbf5309_1
entrypoints=0.4=pyhd8ed1ab_0
et_xmlfile=1.1.0=py39haa95532_0
fire=0.4.0=pyh44b312d_0
flatbuffers=2.0.6=h0e60522_0
flit-core=3.7.1=pyhd8ed1ab_0
freetype=2.10.4=h546665d_1
frozenlist=1.3.0=py39hb82d6ee_1
future=0.18.2=pypi_0
gast=0.4.0=pyh9f0ad1d_0
gflags=2.2.2=ha925a31_1004
giflib=5.2.1=h8d14728_2
glog=0.4.0=h0174b99_3
google=3.0.0=pypi_0
google-api-core=2.8.0=pyhd8ed1ab_1
google-api-core-grpc=2.8.0=hd8ed1ab_1
google-api-python-client=2.90.0=pyhd8ed1ab_0
google-auth=1.35.0=pypi_0
google-auth-httplib2=0.1.0=pyhd8ed1ab_1
google-auth-oauthlib=0.4.1=py_2
google-cloud-bigquery=2.24.1=pyhd3deb0d_0
google-cloud-bigquery-core=2.24.1=pyhd3deb0d_0
google-cloud-bigquery-storage-core=2.11.0=pyh6c4a22f_0
google-cloud-core=2.3.2=pyhd8ed1ab_0
google-crc32c=1.5.0=py39h2bbff1b_0
google-pasta=0.2.0=pyh8c360ce_0
google-resumable-media=2.5.0=pyhd8ed1ab_0
googleapis-common-protos=1.57.0=py39h35db3c3_0
greenlet=1.1.2=py39h415ef7b_2
grpc-cpp=1.35.0=hc60d5dd_4
grpcio=1.45.0=py39hb76b349_0
grpcio-status=1.41.1=pyhd8ed1ab_0
gym=0.21.0=py39h832f523_2
h5py=3.8.0=pypi_0
hdf5=1.12.1=nompi_h2a0e4a3_104
httplib2=0.22.0=pyhd8ed1ab_0
hyperopt=0.2.5=dev_0
icu=68.2=h0e60522_0
idna=3.3=pyhd8ed1ab_0
imageio=2.19.3=pyhcf75d05_0
importlib-metadata=4.11.3=py39hcbf5309_1
importlib_resources=5.7.1=pyhd8ed1ab_0
intel-openmp=2022.0.0=h57928b3_3663
ipykernel=6.4.1=py39h832f523_0
ipympl=0.8.0=pyhd8ed1ab_0
ipyparallel=6.3.0=py39hcbf5309_2
ipython=7.32.0=py39hcbf5309_0
ipython_genutils=0.2.0=py_1
ipywidgets=7.7.3=pyhd8ed1ab_0
jedi=0.18.1=py39hcbf5309_1
jinja2=3.1.1=pyhd8ed1ab_0
joblib=1.1.0=pyhd8ed1ab_0
jpeg=9e=h8ffe710_1
jsonschema=4.4.0=pyhd8ed1ab_0
jupyter_client=7.2.2=pyhd8ed1ab_1
jupyter_core=4.9.2=py39hcbf5309_0
jupyterlab_pygments=0.2.2=pyhd8ed1ab_0
jupyterlab_widgets=1.1.0=pyhd8ed1ab_0
keras=2.6.0=pyhd3eb1b0_0
keras-preprocessing=1.1.2=pyhd8ed1ab_0
kiwisolver=1.4.2=py39h2e07f2f_1
krb5=1.19.3=h1176d77_0
libblas=3.9.0=14_win64_mkl
libbrotlicommon=1.0.9=h8ffe710_7
libbrotlidec=1.0.9=h8ffe710_7
libbrotlienc=1.0.9=h8ffe710_7
libcblas=3.9.0=14_win64_mkl
libclang=11.1.0=default_h5c34c98_1
libcrc32c=1.1.2=h0e60522_0
libcst=1.0.1=py39he61d37a_0
libcurl=7.82.0=h789b8ee_0
libffi=3.4.2=h8ffe710_5
liblapack=3.9.0=14_win64_mkl
libpng=1.6.37=h1d00b33_2
libprotobuf=3.14.0=h7755175_0
libsodium=1.0.18=h8d14728_1
libssh2=1.10.0=h680486a_2
libthrift=0.13.0=hdfef310_6
libtiff=4.2.0=h763f289_2
libutf8proc=2.7.0=hcb41399_0
libwebp=1.2.2=h57928b3_0
libwebp-base=1.2.2=h8ffe710_1
libzlib=1.2.11=h8ffe710_1014
llvmlite=0.39.1=py39h23ce68f_0
lz4-c=1.9.3=h8ffe710_1
m2w64-bwidget=1.9.10=2
m2w64-bzip2=1.0.6=6
m2w64-expat=2.1.1=2
m2w64-fftw=3.3.4=6
m2w64-flac=1.3.1=3
m2w64-gcc-libgfortran=5.3.0=6
m2w64-gcc-libs=5.3.0=7
m2w64-gcc-libs-core=5.3.0=7
m2w64-gettext=0.19.7=2
m2w64-gmp=6.1.0=2
m2w64-gsl=2.1=2
m2w64-libiconv=1.14=6
m2w64-libjpeg-turbo=1.4.2=3
m2w64-libogg=1.3.2=3
m2w64-libpng=1.6.21=2
m2w64-libsndfile=1.0.26=2
m2w64-libtiff=4.0.6=2
m2w64-libvorbis=1.3.5=2
m2w64-libwinpthread-git=5.0.0.4634.697f757=2
m2w64-libxml2=2.9.3=3
m2w64-mpfr=3.1.4=4
m2w64-pcre2=10.34=0
m2w64-speex=1.2rc2=3
m2w64-speexdsp=1.2rc3=3
m2w64-tcl=8.6.5=3
m2w64-tk=8.6.5=3
m2w64-tktable=2.10=5
m2w64-wineditline=2.101=5
m2w64-xz=5.2.2=2
m2w64-zlib=1.2.8=10
markdown=3.3.6=pyhd8ed1ab_0
markupsafe=2.1.1=py39hb82d6ee_1
matplotlib=3.4.3=py39hcbf5309_1
matplotlib-base=3.4.3=py39h581301d_2
matplotlib-inline=0.1.3=pyhd8ed1ab_0
mbpls=1.0.4=pypi_0
metakernel=0.29.4=pyhd8ed1ab_0
mistune=0.8.4=py39hb82d6ee_1005
mkl=2022.0.0=h0e2418a_796
more-itertools=8.12.0=pyhd8ed1ab_0
mplcairo=0.4=pypi_0
msys2-conda-epoch=20160418=1
multidict=6.0.2=py39hb82d6ee_1
mypy_extensions=1.0.0=pyha770c72_0
nbclient=0.6.0=pyhd8ed1ab_0
nbconvert=6.5.0=pyhd8ed1ab_0
nbconvert-core=6.5.0=pyhd8ed1ab_0
nbconvert-pandoc=6.5.0=pyhd8ed1ab_0
nbformat=5.3.0=pyhd8ed1ab_0
nest-asyncio=1.5.5=pyhd8ed1ab_0
networkx=2.8=pypi_0
notebook=6.4.11=pyha770c72_0
numba=0.56.4=py39hf11a4ad_0
numpy=1.19.5=pypi_0
oauthlib=3.2.0=pyhd8ed1ab_0
oct2py=5.6.0=pyha21a80b_0
octave_kernel=0.35.1=pyhd8ed1ab_0
openpyxl=3.0.10=py39h2bbff1b_0
openssl=1.1.1u=h2bbff1b_0
opt_einsum=3.3.0=pyhd8ed1ab_1
packaging=21.3=pyhd8ed1ab_0
pandas=1.3.3=py39h2e25243_0
pandoc=2.18=h57928b3_0
pandocfilters=1.5.0=pyhd8ed1ab_0
parquet-cpp=1.5.1=2
parso=0.8.3=pyhd8ed1ab_0
patsy=0.5.2=pyhd8ed1ab_0
pexpect=4.8.0=pyh1a96a4e_2
pickleshare=0.7.5=py_1003
pillow=9.0.1=py39hdc2b20a_0
pip=22.0.4=pyhd8ed1ab_0
portalocker=2.6.0=py39hcbf5309_1
prometheus_client=0.14.1=pyhd8ed1ab_0
prompt-toolkit=3.0.29=pyha770c72_0
proto-plus=1.19.6=pyhd8ed1ab_0
protobuf=3.14.0=py39h415ef7b_1
ptyprocess=0.7.0=pyhd3deb0d_0
py4j=0.10.9.5=pyhd8ed1ab_0
pyarrow=3.0.0=py39hf9247be_4_cpu
pyasn1=0.4.8=py_0
pyasn1-modules=0.2.8=py_0
pycparser=2.21=pyhd8ed1ab_0
pygame=2.1.2=pypi_0
pyglet=1.5.27=pypi_0
pygments=2.11.2=pyhd8ed1ab_0
pyjwt=2.3.0=pyhd8ed1ab_1
pymongo=3.12.0=py39hd77b12b_0
pynndescent=0.5.8=pyh1a96a4e_0
pyopenssl=22.0.0=pyhd8ed1ab_0
pyparsing=3.0.8=pyhd8ed1ab_0
pyperclip=1.8.2=pyhd8ed1ab_2
pyqt=5.12.3=py39hcbf5309_8
pyqt-impl=5.12.3=py39h415ef7b_8
pyqt5-sip=4.19.18=py39h415ef7b_8
pyqtchart=5.12=py39h415ef7b_8
pyqtwebengine=5.12.1=py39h415ef7b_8
pyrfr=0.8.2=py39h2e07f2f_2
pyrsistent=0.18.1=py39hb82d6ee_1
pysocks=1.7.1=py39hcbf5309_5
python=3.9.12=h9a09f29_1_cpython
python-dateutil=2.8.2=pyhd8ed1ab_0
python-fastjsonschema=2.15.3=pyhd8ed1ab_0
python-flatbuffers=1.12=pyhd8ed1ab_1
python-magic-bin=0.4.14=pypi_0
python-tzdata=2022.7=pyhd8ed1ab_0
python_abi=3.9=2_cp39
pytimeparse=1.1.8=py_0
pytz=2022.1=pyhd8ed1ab_0
pytz-deprecation-shim=0.1.0.post0=py39hcbf5309_3
pyu2f=0.1.5=pyhd8ed1ab_0
pywin32=303=py39hb82d6ee_0
pywinpty=2.0.5=py39h99910a6_1
pyyaml=6.0=pypi_0
pyzmq=22.3.0=py39he46f08e_2
qt=5.12.9=h5909a2a_4
r-base=4.1.3=hdca333a_5
re2=2020.11.01=h0e60522_0
requests=2.27.1=pyhd8ed1ab_0
requests-oauthlib=1.3.1=pyhd8ed1ab_0
rpy2=3.5.7=py39r41h90537b9_0
rsa=4.8=pyhd8ed1ab_0
scikit-learn=1.0=py39h74df8f2_1
scipy=1.7.1=py39hc0c34ad_0
seaborn=0.11.2=hd8ed1ab_0
seaborn-base=0.11.2=pyhd8ed1ab_0
send2trash=1.8.0=pyhd8ed1ab_0
setuptools=59.8.0=py39hcbf5309_1
simple-slurm=0.2.5=pypi_0
simpleaudio=1.0.4=pypi_0
simplegeneric=0.8.1=py_1
six=1.15.0=pypi_0
snappy=1.1.9=h6c2663c_0
soupsieve=2.3.1=pyhd8ed1ab_0
sqlalchemy=1.4.35=py39hb82d6ee_0
sqlite=3.38.2=h8ffe710_0
statsmodels=0.13.2=py39h5d4886f_0
tabulate=0.8.9=pyhd8ed1ab_0
tbb=2021.5.0=h2d74725_1
tensorboard=2.6.0=py_1
tensorboard-data-server=0.6.1=pypi_0
tensorboard-plugin-wit=1.8.1=pyhd8ed1ab_0
tensorflow=2.6.0=mkl_py39h31650da_0
tensorflow-base=2.6.0=mkl_py39h9201259_0
tensorflow-estimator=2.6.0=pyh7b7c402_0
termcolor=1.1.0=py_2
terminado=0.13.3=py39hcbf5309_1
threadpoolctl=3.1.0=pyh8a188c0_0
tinycss2=1.1.1=pyhd8ed1ab_0
tk=8.6.12=h8ffe710_0
toml=0.10.2=pyhd8ed1ab_0
tornado=6.1=py39hb82d6ee_3
tqdm=4.64.0=pyhd8ed1ab_0
traitlets=5.1.1=pyhd8ed1ab_0
typing-extensions=3.7.4.3=pypi_0
typing_extensions=4.2.0=pyha770c72_1
typing_inspect=0.9.0=pyhd8ed1ab_0
tzdata=2022a=h191b570_0
tzlocal=4.2=py39hcbf5309_2
ucrt=10.0.20348.0=h57928b3_0
umap-learn=0.5.3=py39hcbf5309_0
uritemplate=4.1.1=pyhd8ed1ab_0
urllib3=1.26.9=pyhd8ed1ab_0
vc=14.2=hb210afc_6
verta=0.23.0=pyhd8ed1ab_0
vs2015_runtime=14.29.30037=h902a5da_6
wcwidth=0.2.5=pyh9f0ad1d_2
webencodings=0.5.1=py_1
werkzeug=2.1.1=pyhd8ed1ab_0
wheel=0.35.1=pyh9f0ad1d_0
widgetsnbextension=3.6.0=py39hcbf5309_0
win_inet_pton=1.1.0=py39hcbf5309_4
winpty=0.4.3=4
wrapt=1.14.0=py39hb82d6ee_1
xz=5.2.5=h62dcd97_1
yaml=0.2.5=h8ffe710_2
yarl=1.7.2=py39hb82d6ee_2
zeromq=4.3.4=h0e60522_1
zipp=3.8.0=pyhd8ed1ab_0
zlib=1.2.11=h8ffe710_1014
zstd=1.4.9=h6255e5f_0

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