Move to buildtools and pyproject.toml (#163)

* move to buildtools and pproject.toml * isolated build * include for flat layout, reinstate setup.py * add foreground init * add more inits * add bias init * isolated build * include for flat layout, reinstate setup.py * include for flat layout, reinstate setup.py * fix _bias naming error * try restoring a test file * restore kappa test data * restore cash data * restore bandpass test files * codestyle * setuptools_scm and remove astropy * add missing os import * Avoid `noqa F401` * Sort imports * Pack `cash` * Pack `gaussian` * Pack `poisson` * Pack `ps` * Sort imports * Drop `setup.cfg` in favor of `pyproject.toml` * Add common cosmology for testing * Pass new fixed cosmology to tests * Check specific value of likelihood rather than finite * Fix cosmopower test * Clean comments * add ccl to include * add testpaths * try removing conftest * try more verbosity * add testpaths to package data * testpaths must be array * test source in coverage run * test path to tests * test include * test python * test specify files * Re-create setup.cfg * Add pythonpath * try remove `cfg` * Revert last two commits * Fully revert commit `a41970a` * change setup method of mflike test * Add dependency tensorflow * test explicit path to `soliket` * Correct config file for `cov` --------- Co-authored-by: Giacomo Galloni <[email protected]>
simonsobs · Jun 13, 2024 · ae60884 · ae60884
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commit ae60884
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diff --git a/.gitignore b/.gitignore
@@ -1,3 +1,10 @@
+# soliket specific
+chains/
+
+# macos
+.DS_Store
+.tmp
+
 # Byte-compiled / optimized / DLL files
 __pycache__/
 *.py[cod]

diff --git a/docs/conf.py b/docs/conf.py
@@ -13,7 +13,9 @@
 for module in MOCK_MODULES:
     sys.modules[module] = mock.Mock()
 
-import soliket # noqa F401
+import soliket
+
+__all__ = ['soliket']
 
 # -- Project information -----------------------------------------------------
 # https://www.sphinx-doc.org/en/master/usage/configuration.html#project-information

diff --git a/docs/halo_model.rst b/docs/halo_model.rst
@@ -0,0 +1,19 @@
+HaloModel (Halo Model Non-Linear Power Spectrum)
+====
+
+.. automodule:: soliket.halo_model.halo_model
+
+
+HaloModel Theory
+-----------
+
+.. autoclass:: soliket.halo_model.HaloModel
+    :members:
+
+
+pyhalomodel Halo Model
+-----------
+
+.. autoclass:: soliket.halo_model.HaloModel_pyhm
+    :exclude-members: initialize
+    :members:
diff --git a/notebooks/dev/clusters.ipynb b/notebooks/dev/clusters.ipynb