Bump version: 1.0.1.9015 → 1.4.1.9014

sigven · Jun 15, 2024 · e07c3d6 · e07c3d6
1 parent 2de16e3
commit e07c3d6
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Showing 11 changed files with 13 additions and 13 deletions.
diff --git a/.bumpversion.cfg b/.bumpversion.cfg
@@ -1,5 +1,5 @@
 [bumpversion]
-current_version = 1.0.1.9015
+current_version = 1.4.1.9014
 commit = True
 tag = False
 parse = (?P<major>\d+)\.(?P<minor>\d+)\.(?P<patch>\d+)(\.(?P<dev>\d+))?

diff --git a/.github/workflows/build_conda_recipes.yaml b/.github/workflows/build_conda_recipes.yaml
@@ -10,7 +10,7 @@ env:
   recipe_path: conda/recipe
   env_yml_path: conda/env/yml
   env_lock_path: conda/env/lock
-  VERSION: '1.0.1.9015' # versioned by bump2version
+  VERSION: '1.4.1.9014' # versioned by bump2version
 jobs:
   build_pcgrr_conda_pkg:
     # When merging to one of the branches above and the commit message matches

diff --git a/conda/env/yml/pcgr.yml b/conda/env/yml/pcgr.yml
@@ -6,7 +6,7 @@ channels:
   - conda-forge
 
 dependencies:
-  - pcgr::pcgr ==1.0.1.9015 # versioned by bump2version
+  - pcgr::pcgr ==1.4.1.9014 # versioned by bump2version
   - bedtools
   - bcftools
   - cyvcf2

diff --git a/conda/env/yml/pcgrr.yml b/conda/env/yml/pcgrr.yml
@@ -7,7 +7,7 @@ channels:
 
 dependencies:
   - python
-  - pcgr::r-pcgrr ==1.0.1.9015 # versioned by bump2version
+  - pcgr::r-pcgrr ==1.4.1.9014 # versioned by bump2version
   - pcgr::r-cpsr
   - r-argparse
   - bioconductor-bsgenome.hsapiens.ucsc.hg38

diff --git a/conda/env/yml/pkgdown.yml b/conda/env/yml/pkgdown.yml
@@ -4,7 +4,7 @@ channels:
   - bioconda
   - conda-forge
 dependencies:
-  - pcgr::r-pcgrr ==1.0.1.9015 # versioned by bump2version
+  - pcgr::r-pcgrr ==1.4.1.9014 # versioned by bump2version
   - r-pkgdown
   - r-readr
   - pandoc
diff --git a/conda/recipe/pcgr/meta.yaml b/conda/recipe/pcgr/meta.yaml
@@ -1,6 +1,6 @@
 package:
   name: pcgr
-  version: 1.0.1.9015 # versioned by bump2version
+  version: 1.4.1.9014 # versioned by bump2version
 
 source:
   path: ../../..

diff --git a/conda/recipe/pcgrr/meta.yaml b/conda/recipe/pcgrr/meta.yaml
@@ -1,6 +1,6 @@
 package:
   name: r-pcgrr
-  version: 1.0.1.9015 # versioned by bump2version
+  version: 1.4.1.9014 # versioned by bump2version
 
 source:
   path: ../../../pcgrr

diff --git a/pcgr/_version.py b/pcgr/_version.py
@@ -1,2 +1,2 @@
 # versioned by bump2version
-__version__ = '1.0.1.9015'
+__version__ = '1.4.1.9014'
diff --git a/pcgrr/DESCRIPTION b/pcgrr/DESCRIPTION
@@ -1,7 +1,7 @@
 Package: pcgrr
 Type: Package
 Title: Personal Cancer Genome ReporteR
-Version: 1.0.1.9015
+Version: 1.4.1.9014
 Authors@R:
     c(person(given = "Sigve",
              family = "Nakken",

diff --git a/pcgrr/vignettes/installation.Rmd b/pcgrr/vignettes/installation.Rmd
@@ -13,7 +13,7 @@ output: rmarkdown::html_document
 
 ```bash
 cd /Users/you/dir4/conda
-PCGR_VERSION="1.0.1.9015"
+PCGR_VERSION="1.4.1.9014"
 PCGR_REPO="https://raw.githubusercontent.com/sigven/pcgr/v${PCGR_VERSION}/conda/env/lock/"
 PLATFORM="linux" # or "osx"
 
@@ -143,7 +143,7 @@ following example:
 cd /Users/you/dir4/conda
 PLATFORM="osx-64" # or "linux-64"
 
-PCGR_VERSION="1.0.1.9015"
+PCGR_VERSION="1.4.1.9014"
 PCGR_REPO="https://raw.githubusercontent.com/sigven/pcgr/v${PCGR_VERSION}/conda/env/lock/"
 PLATFORM="linux" # or "osx"
 
@@ -233,7 +233,7 @@ docker container run -it --rm \
     -v /Users/you/dir1/data:/root/pcgr_refdata \
     -v /Users/you/dir2/pcgr_inputs:/root/pcgr_inputs \
     -v /Users/you/dir3/pcgr_outputs:/root/pcgr_outputs \
-    sigven/pcgr:1.0.1.9015 \
+    sigven/pcgr:1.4.1.9014 \
     pcgr \
       --input_vcf "/root/pcgr_inputs/tumor_sample.BRCA.vcf.gz" \
       --vep_dir "/root/vep/.vep" \

diff --git a/pyproject.toml b/pyproject.toml
@@ -5,7 +5,7 @@ build-backend = "setuptools.build_meta"
 
 [project]
 name = "pcgr"
-version = "1.0.1.9015" # versioned by bump2version
+version = "1.4.1.9014" # versioned by bump2version
 description = "Personal Cancer Genome Reporter (PCGR) - variant interpretation for precision cancer medicine"
 authors = [
     {name = "Sigve Nakken", email = "[email protected]"},