This folder contains the code used in the paper titled "Nexus of Depression and Subcortical Volumes: Unveiling Shared Genetic Architecture"
Linux environment (tested on CentOS release 6.9, Ubuntu 18.04). Python 3 (tested with Python 3.7), with numpy, scipy>=1.2.1, numdifftools, matplotlib_venn Reasonably new GCC compiler (tested with gcc/6.1.0) or an Intel C++ compiler (tested with intel-2018b) Boost libraries (https://www.boost.org/, tested with 1.68.0)
MiXeR v1.3 (https://github.com/precimed/mixer), cond/conjFDR analysis (https://github.com/precimed/pleiofdr), LAVA (https://github.com/josefin-werme/LAVA) S-MultiXcan (https://github.com/hakyimlab/MetaXcan)